Hb_000399_030

Information

Type -
Description -
Location Contig399: 113579-117217
Sequence    

Annotation

kegg
ID rcu:RCOM_1111370
description hypothetical protein
nr
ID XP_012072843.1
description PREDICTED: uncharacterized protein LOC105634579 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KN22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05976 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39690: 116190-117205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000399_030 0.0 - - PREDICTED: uncharacterized protein LOC105634579 [Jatropha curcas]
2 Hb_151103_010 0.1906966661 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007076_010 0.1994003804 - - calcium-dependent protein kinase, putative [Ricinus communis]
4 Hb_011794_050 0.2018107377 - - transcription factor, putative [Ricinus communis]
5 Hb_000320_040 0.2060657003 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000926_210 0.2063373886 - - LIM and calponin domains-containing protein 1, putative [Theobroma cacao]
7 Hb_001366_390 0.2095146266 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
8 Hb_011918_030 0.215140871 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
9 Hb_000175_300 0.2176541363 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
10 Hb_003688_220 0.2224922524 - - unknown [Populus trichocarpa]
11 Hb_000905_100 0.2226425008 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like isoform X1 [Jatropha curcas]
12 Hb_089305_010 0.2248219491 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
13 Hb_000465_020 0.2252352412 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
14 Hb_007904_290 0.2254456759 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
15 Hb_010812_060 0.2259809378 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
16 Hb_000002_370 0.2260392255 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
17 Hb_007130_020 0.2268754161 - - -
18 Hb_001242_180 0.2293196291 - - choline/ethanolamine kinase, putative [Ricinus communis]
19 Hb_002374_030 0.2299026664 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
20 Hb_002311_120 0.2318591923 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000399_030 Hb_000399_030 Hb_151103_010 Hb_151103_010 Hb_000399_030--Hb_151103_010 Hb_007076_010 Hb_007076_010 Hb_000399_030--Hb_007076_010 Hb_011794_050 Hb_011794_050 Hb_000399_030--Hb_011794_050 Hb_000320_040 Hb_000320_040 Hb_000399_030--Hb_000320_040 Hb_000926_210 Hb_000926_210 Hb_000399_030--Hb_000926_210 Hb_001366_390 Hb_001366_390 Hb_000399_030--Hb_001366_390 Hb_151103_010--Hb_007076_010 Hb_003688_220 Hb_003688_220 Hb_151103_010--Hb_003688_220 Hb_010407_150 Hb_010407_150 Hb_151103_010--Hb_010407_150 Hb_001001_010 Hb_001001_010 Hb_151103_010--Hb_001001_010 Hb_002200_020 Hb_002200_020 Hb_151103_010--Hb_002200_020 Hb_028487_040 Hb_028487_040 Hb_151103_010--Hb_028487_040 Hb_007076_010--Hb_003688_220 Hb_007076_010--Hb_001001_010 Hb_007076_010--Hb_010407_150 Hb_007076_010--Hb_002200_020 Hb_001396_040 Hb_001396_040 Hb_007076_010--Hb_001396_040 Hb_189208_060 Hb_189208_060 Hb_011794_050--Hb_189208_060 Hb_004040_010 Hb_004040_010 Hb_011794_050--Hb_004040_010 Hb_002374_030 Hb_002374_030 Hb_011794_050--Hb_002374_030 Hb_059318_010 Hb_059318_010 Hb_011794_050--Hb_059318_010 Hb_026016_010 Hb_026016_010 Hb_011794_050--Hb_026016_010 Hb_074966_010 Hb_074966_010 Hb_011794_050--Hb_074966_010 Hb_000320_040--Hb_003688_220 Hb_001638_120 Hb_001638_120 Hb_000320_040--Hb_001638_120 Hb_002085_090 Hb_002085_090 Hb_000320_040--Hb_002085_090 Hb_007130_020 Hb_007130_020 Hb_000320_040--Hb_007130_020 Hb_000002_370 Hb_000002_370 Hb_000320_040--Hb_000002_370 Hb_001235_160 Hb_001235_160 Hb_000320_040--Hb_001235_160 Hb_001221_070 Hb_001221_070 Hb_000926_210--Hb_001221_070 Hb_004553_040 Hb_004553_040 Hb_000926_210--Hb_004553_040 Hb_001277_370 Hb_001277_370 Hb_000926_210--Hb_001277_370 Hb_007632_230 Hb_007632_230 Hb_000926_210--Hb_007632_230 Hb_167206_010 Hb_167206_010 Hb_000926_210--Hb_167206_010 Hb_004109_150 Hb_004109_150 Hb_000926_210--Hb_004109_150 Hb_010812_060 Hb_010812_060 Hb_001366_390--Hb_010812_060 Hb_001366_390--Hb_004040_010 Hb_001366_390--Hb_000002_370 Hb_018134_010 Hb_018134_010 Hb_001366_390--Hb_018134_010 Hb_001366_390--Hb_011794_050 Hb_000185_130 Hb_000185_130 Hb_001366_390--Hb_000185_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.111606 0.196468 0.100429 0 0.0159435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0414381 0 0 0.0130617 0.0673907

CAGE analysis