Hb_000926_210

Information

Type -
Description -
Location Contig926: 238400-238987
Sequence    

Annotation

kegg
ID tcc:TCM_030822
description LIM and calponin domains-containing protein 1, putative
nr
ID XP_007020738.1
description LIM and calponin domains-containing protein 1, putative [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061F5W7
description LIM and calponin domains-containing protein 1, putative OS=Theobroma cacao GN=TCM_030822 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62683: 238328-238523 , PASA_asmbl_62684: 238820-238916
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_210 0.0 - - LIM and calponin domains-containing protein 1, putative [Theobroma cacao]
2 Hb_001221_070 0.1243300772 - - PREDICTED: calcium-binding protein CML38-like [Jatropha curcas]
3 Hb_004553_040 0.1307642136 - - PREDICTED: protein YLS9-like [Jatropha curcas]
4 Hb_001277_370 0.1364690672 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
5 Hb_007632_230 0.1389401317 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
6 Hb_167206_010 0.1480924468 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
7 Hb_004109_150 0.1506522733 - - glutathione-S-transferase tau 1 [Hevea brasiliensis]
8 Hb_000319_010 0.1544785664 - - hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
9 Hb_011794_050 0.1549908183 - - transcription factor, putative [Ricinus communis]
10 Hb_018134_010 0.1550104799 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
11 Hb_070613_010 0.1574422389 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_054926_010 0.1593177263 - - glutamate receptor 2 plant, putative [Ricinus communis]
13 Hb_002783_130 0.1600057786 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
14 Hb_004040_010 0.1616196257 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
15 Hb_002301_340 0.1641580141 transcription factor TF Family: B3 leafy cotyledon 2 [Ricinus communis]
16 Hb_008019_010 0.1680617994 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
17 Hb_026016_010 0.1717038344 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_008406_060 0.1730369123 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
19 Hb_007357_010 0.1749312311 - - cytochrome P450, putative [Ricinus communis]
20 Hb_186995_010 0.1753088396 - - hypothetical protein POPTR_0012s01755g [Populus trichocarpa]

Gene co-expression network

sample Hb_000926_210 Hb_000926_210 Hb_001221_070 Hb_001221_070 Hb_000926_210--Hb_001221_070 Hb_004553_040 Hb_004553_040 Hb_000926_210--Hb_004553_040 Hb_001277_370 Hb_001277_370 Hb_000926_210--Hb_001277_370 Hb_007632_230 Hb_007632_230 Hb_000926_210--Hb_007632_230 Hb_167206_010 Hb_167206_010 Hb_000926_210--Hb_167206_010 Hb_004109_150 Hb_004109_150 Hb_000926_210--Hb_004109_150 Hb_001221_070--Hb_001277_370 Hb_001221_070--Hb_007632_230 Hb_001221_070--Hb_004553_040 Hb_007357_010 Hb_007357_010 Hb_001221_070--Hb_007357_010 Hb_001221_070--Hb_167206_010 Hb_000319_010 Hb_000319_010 Hb_001221_070--Hb_000319_010 Hb_004553_040--Hb_167206_010 Hb_004553_040--Hb_001277_370 Hb_004553_040--Hb_007632_230 Hb_004553_040--Hb_000319_010 Hb_018563_010 Hb_018563_010 Hb_004553_040--Hb_018563_010 Hb_001277_370--Hb_007632_230 Hb_001277_370--Hb_167206_010 Hb_001277_370--Hb_007357_010 Hb_001277_370--Hb_000319_010 Hb_007632_230--Hb_000319_010 Hb_054926_010 Hb_054926_010 Hb_007632_230--Hb_054926_010 Hb_007632_230--Hb_007357_010 Hb_186995_010 Hb_186995_010 Hb_167206_010--Hb_186995_010 Hb_167206_010--Hb_018563_010 Hb_012496_020 Hb_012496_020 Hb_167206_010--Hb_012496_020 Hb_167206_010--Hb_000319_010 Hb_002030_100 Hb_002030_100 Hb_004109_150--Hb_002030_100 Hb_000156_080 Hb_000156_080 Hb_004109_150--Hb_000156_080 Hb_002783_130 Hb_002783_130 Hb_004109_150--Hb_002783_130 Hb_006358_030 Hb_006358_030 Hb_004109_150--Hb_006358_030 Hb_000656_260 Hb_000656_260 Hb_004109_150--Hb_000656_260 Hb_036492_020 Hb_036492_020 Hb_004109_150--Hb_036492_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.983348 1.16353 0.800362 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104072 0 0 0 0.631032

CAGE analysis