Hb_000185_130

Information

Type -
Description -
Location Contig185: 165686-171271
Sequence    

Annotation

kegg
ID rcu:RCOM_1509770
description UBX domain-containing protein 8-B, putative
nr
ID XP_002511359.1
description UBX domain-containing protein 8-B, putative [Ricinus communis]
swissprot
ID Q9M0N1
description Plant UBX domain-containing protein 10 OS=Arabidopsis thaliana GN=PUX10 PE=2 SV=1
trembl
ID B9RAY4
description UBX domain-containing protein 8-B, putative OS=Ricinus communis GN=RCOM_1509770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18116: 166360-166851 , PASA_asmbl_18117: 167063-167684 , PASA_asmbl_18119: 169559-170507 , PASA_asmbl_18120: 171223-171685
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000185_130 0.0 - - UBX domain-containing protein 8-B, putative [Ricinus communis]
2 Hb_000588_050 0.0838561247 transcription factor TF Family: Trihelix hypothetical protein POPTR_0008s02580g [Populus trichocarpa]
3 Hb_000103_370 0.1147420222 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
4 Hb_008895_020 0.1182346026 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
5 Hb_001366_390 0.1204103951 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
6 Hb_000836_090 0.1261137187 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
7 Hb_124677_090 0.1319506063 - - conserved hypothetical protein [Ricinus communis]
8 Hb_054926_010 0.1348021884 - - glutamate receptor 2 plant, putative [Ricinus communis]
9 Hb_000809_130 0.1351919932 - - PREDICTED: peroxidase 10 isoform X3 [Jatropha curcas]
10 Hb_000049_280 0.1362152571 - - PREDICTED: ribokinase-like isoform X4 [Jatropha curcas]
11 Hb_008019_010 0.1385551473 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
12 Hb_000002_370 0.1412615111 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
13 Hb_000928_280 0.1421312375 - - hypothetical protein VITISV_005300 [Vitis vinifera]
14 Hb_033006_020 0.1439620765 - - Aspartate aminotransferase, putative [Ricinus communis]
15 Hb_007632_230 0.1440621502 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
16 Hb_018134_010 0.1444443075 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
17 Hb_007123_010 0.1448451153 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
18 Hb_004223_080 0.1459970298 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
19 Hb_004223_240 0.1464377827 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
20 Hb_018563_010 0.1476666312 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000185_130 Hb_000185_130 Hb_000588_050 Hb_000588_050 Hb_000185_130--Hb_000588_050 Hb_000103_370 Hb_000103_370 Hb_000185_130--Hb_000103_370 Hb_008895_020 Hb_008895_020 Hb_000185_130--Hb_008895_020 Hb_001366_390 Hb_001366_390 Hb_000185_130--Hb_001366_390 Hb_000836_090 Hb_000836_090 Hb_000185_130--Hb_000836_090 Hb_124677_090 Hb_124677_090 Hb_000185_130--Hb_124677_090 Hb_000049_280 Hb_000049_280 Hb_000588_050--Hb_000049_280 Hb_000588_050--Hb_001366_390 Hb_005643_040 Hb_005643_040 Hb_000588_050--Hb_005643_040 Hb_000588_050--Hb_000103_370 Hb_000928_280 Hb_000928_280 Hb_000588_050--Hb_000928_280 Hb_007123_010 Hb_007123_010 Hb_000103_370--Hb_007123_010 Hb_000002_370 Hb_000002_370 Hb_000103_370--Hb_000002_370 Hb_054926_010 Hb_054926_010 Hb_000103_370--Hb_054926_010 Hb_006922_020 Hb_006922_020 Hb_000103_370--Hb_006922_020 Hb_008019_010 Hb_008019_010 Hb_000103_370--Hb_008019_010 Hb_000809_130 Hb_000809_130 Hb_000103_370--Hb_000809_130 Hb_001638_340 Hb_001638_340 Hb_008895_020--Hb_001638_340 Hb_006651_030 Hb_006651_030 Hb_008895_020--Hb_006651_030 Hb_029977_030 Hb_029977_030 Hb_008895_020--Hb_029977_030 Hb_008895_020--Hb_124677_090 Hb_001477_060 Hb_001477_060 Hb_008895_020--Hb_001477_060 Hb_059275_010 Hb_059275_010 Hb_008895_020--Hb_059275_010 Hb_010812_060 Hb_010812_060 Hb_001366_390--Hb_010812_060 Hb_004040_010 Hb_004040_010 Hb_001366_390--Hb_004040_010 Hb_001366_390--Hb_000002_370 Hb_018134_010 Hb_018134_010 Hb_001366_390--Hb_018134_010 Hb_011794_050 Hb_011794_050 Hb_001366_390--Hb_011794_050 Hb_033006_020 Hb_033006_020 Hb_000836_090--Hb_033006_020 Hb_002053_180 Hb_002053_180 Hb_000836_090--Hb_002053_180 Hb_007130_020 Hb_007130_020 Hb_000836_090--Hb_007130_020 Hb_000905_100 Hb_000905_100 Hb_000836_090--Hb_000905_100 Hb_000836_090--Hb_000002_370 Hb_000199_040 Hb_000199_040 Hb_000836_090--Hb_000199_040 Hb_124677_090--Hb_001477_060 Hb_007357_010 Hb_007357_010 Hb_124677_090--Hb_007357_010 Hb_124677_090--Hb_001638_340 Hb_124677_090--Hb_054926_010 Hb_001715_060 Hb_001715_060 Hb_124677_090--Hb_001715_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.299355 4.43578 10.3076 7.90279 0.245212 0.218058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0294012 0.0231314 0 0.11072 5.092

CAGE analysis