Hb_004102_020

Information

Type -
Description -
Location Contig4102: 1006-2774
Sequence    

Annotation

kegg
ID rcu:RCOM_0897760
description peroxisome biogenesis factor, putative (EC:3.6.4.3)
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004102_020 0.0 - - -
2 Hb_003127_050 0.1939298145 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_000392_410 0.2457759763 - - PREDICTED: uncharacterized protein LOC104882159 [Vitis vinifera]
4 Hb_000025_420 0.2684293449 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002311_120 0.318999012 - - conserved hypothetical protein [Ricinus communis]
6 Hb_026205_030 0.327186675 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_137701_020 0.339462554 - - putative protein kinase [Oryza sativa Japonica Group]
8 Hb_004176_090 0.3407260299 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
9 Hb_001925_070 0.3430167713 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
10 Hb_145331_010 0.3473095792 transcription factor TF Family: NAC hypothetical protein POPTR_0016s07690g [Populus trichocarpa]
11 Hb_000160_080 0.3582247174 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM2b-like [Jatropha curcas]
12 Hb_005183_060 0.358286267 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
13 Hb_004880_120 0.3600057238 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
14 Hb_063869_010 0.3601155909 - - JHL22C18.10 [Jatropha curcas]
15 Hb_000230_250 0.3622821454 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
16 Hb_002759_080 0.3630480097 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
17 Hb_027751_010 0.3673915959 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
18 Hb_055314_010 0.371808767 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_001377_170 0.374742557 - - hypothetical protein JCGZ_14264 [Jatropha curcas]
20 Hb_134932_010 0.3756791727 - - PREDICTED: wall-associated receptor kinase-like 1, partial [Populus euphratica]

Gene co-expression network

sample Hb_004102_020 Hb_004102_020 Hb_003127_050 Hb_003127_050 Hb_004102_020--Hb_003127_050 Hb_000392_410 Hb_000392_410 Hb_004102_020--Hb_000392_410 Hb_000025_420 Hb_000025_420 Hb_004102_020--Hb_000025_420 Hb_002311_120 Hb_002311_120 Hb_004102_020--Hb_002311_120 Hb_026205_030 Hb_026205_030 Hb_004102_020--Hb_026205_030 Hb_137701_020 Hb_137701_020 Hb_004102_020--Hb_137701_020 Hb_055314_010 Hb_055314_010 Hb_003127_050--Hb_055314_010 Hb_003127_050--Hb_002311_120 Hb_003127_050--Hb_000392_410 Hb_000039_120 Hb_000039_120 Hb_003127_050--Hb_000039_120 Hb_134932_010 Hb_134932_010 Hb_003127_050--Hb_134932_010 Hb_000392_410--Hb_000025_420 Hb_012807_070 Hb_012807_070 Hb_000392_410--Hb_012807_070 Hb_130579_050 Hb_130579_050 Hb_000392_410--Hb_130579_050 Hb_000574_090 Hb_000574_090 Hb_000392_410--Hb_000574_090 Hb_001863_410 Hb_001863_410 Hb_000392_410--Hb_001863_410 Hb_001205_170 Hb_001205_170 Hb_000392_410--Hb_001205_170 Hb_017098_020 Hb_017098_020 Hb_000025_420--Hb_017098_020 Hb_009780_010 Hb_009780_010 Hb_000025_420--Hb_009780_010 Hb_000025_420--Hb_012807_070 Hb_010091_030 Hb_010091_030 Hb_000025_420--Hb_010091_030 Hb_019026_040 Hb_019026_040 Hb_000025_420--Hb_019026_040 Hb_000399_030 Hb_000399_030 Hb_002311_120--Hb_000399_030 Hb_130469_010 Hb_130469_010 Hb_002311_120--Hb_130469_010 Hb_001198_130 Hb_001198_130 Hb_002311_120--Hb_001198_130 Hb_005725_040 Hb_005725_040 Hb_002311_120--Hb_005725_040 Hb_019762_060 Hb_019762_060 Hb_002311_120--Hb_019762_060 Hb_001377_170 Hb_001377_170 Hb_026205_030--Hb_001377_170 Hb_000453_280 Hb_000453_280 Hb_026205_030--Hb_000453_280 Hb_001925_070 Hb_001925_070 Hb_026205_030--Hb_001925_070 Hb_004767_020 Hb_004767_020 Hb_026205_030--Hb_004767_020 Hb_001103_060 Hb_001103_060 Hb_026205_030--Hb_001103_060 Hb_026205_030--Hb_134932_010 Hb_063869_010 Hb_063869_010 Hb_137701_020--Hb_063869_010 Hb_004880_120 Hb_004880_120 Hb_137701_020--Hb_004880_120 Hb_005183_060 Hb_005183_060 Hb_137701_020--Hb_005183_060 Hb_004176_090 Hb_004176_090 Hb_137701_020--Hb_004176_090 Hb_042141_010 Hb_042141_010 Hb_137701_020--Hb_042141_010 Hb_007507_030 Hb_007507_030 Hb_137701_020--Hb_007507_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.189096 0.149958 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.142145 0 0 0 0.207097

CAGE analysis