Hb_001377_170

Information

Type -
Description -
Location Contig1377: 143716-154089
Sequence    

Annotation

kegg
ID rcu:RCOM_0718470
description RING-H2 finger protein ATL3K, putative
nr
ID KDP28493.1
description hypothetical protein JCGZ_14264 [Jatropha curcas]
swissprot
ID P0CH01
description Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV=1
trembl
ID A0A067K0A5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14264 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring-h2 finger protein atl21a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10396: 152248-152483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_170 0.0 - - hypothetical protein JCGZ_14264 [Jatropha curcas]
2 Hb_026205_030 0.184693578 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_001925_070 0.2692003114 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
4 Hb_143629_140 0.2774611853 - - Ran GTPase binding protein, putative [Ricinus communis]
5 Hb_001103_060 0.2789205609 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
6 Hb_000027_140 0.2825698753 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
7 Hb_003750_130 0.2839899138 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012539_040 0.2856962607 transcription factor TF Family: CPP hypothetical protein JCGZ_07765 [Jatropha curcas]
9 Hb_109515_010 0.2900583521 - - -
10 Hb_000313_290 0.2929315376 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_002016_010 0.294006138 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
12 Hb_001198_130 0.2944546681 - - PREDICTED: potassium channel AKT2/3 [Jatropha curcas]
13 Hb_000031_100 0.2964107936 - - amine oxidase, putative [Ricinus communis]
14 Hb_000320_360 0.2985259755 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
15 Hb_000329_740 0.3013973876 transcription factor TF Family: MYB PREDICTED: myb-related protein MYBAS2 [Jatropha curcas]
16 Hb_001277_340 0.3015571947 - - aldo/keto reductase, putative [Ricinus communis]
17 Hb_003020_300 0.3019626016 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007534_030 0.3033026563 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
19 Hb_002383_050 0.3038581692 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
20 Hb_000453_280 0.304092073 - - negative cofactor 2 transcriptional co-repressor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001377_170 Hb_001377_170 Hb_026205_030 Hb_026205_030 Hb_001377_170--Hb_026205_030 Hb_001925_070 Hb_001925_070 Hb_001377_170--Hb_001925_070 Hb_143629_140 Hb_143629_140 Hb_001377_170--Hb_143629_140 Hb_001103_060 Hb_001103_060 Hb_001377_170--Hb_001103_060 Hb_000027_140 Hb_000027_140 Hb_001377_170--Hb_000027_140 Hb_003750_130 Hb_003750_130 Hb_001377_170--Hb_003750_130 Hb_000453_280 Hb_000453_280 Hb_026205_030--Hb_000453_280 Hb_026205_030--Hb_001925_070 Hb_004767_020 Hb_004767_020 Hb_026205_030--Hb_004767_020 Hb_026205_030--Hb_001103_060 Hb_134932_010 Hb_134932_010 Hb_026205_030--Hb_134932_010 Hb_002552_020 Hb_002552_020 Hb_001925_070--Hb_002552_020 Hb_000254_110 Hb_000254_110 Hb_001925_070--Hb_000254_110 Hb_000808_260 Hb_000808_260 Hb_001925_070--Hb_000808_260 Hb_012539_040 Hb_012539_040 Hb_001925_070--Hb_012539_040 Hb_004648_030 Hb_004648_030 Hb_001925_070--Hb_004648_030 Hb_005917_030 Hb_005917_030 Hb_001925_070--Hb_005917_030 Hb_001832_040 Hb_001832_040 Hb_143629_140--Hb_001832_040 Hb_004108_060 Hb_004108_060 Hb_143629_140--Hb_004108_060 Hb_001472_160 Hb_001472_160 Hb_143629_140--Hb_001472_160 Hb_000349_240 Hb_000349_240 Hb_143629_140--Hb_000349_240 Hb_007192_090 Hb_007192_090 Hb_143629_140--Hb_007192_090 Hb_005211_020 Hb_005211_020 Hb_143629_140--Hb_005211_020 Hb_000094_150 Hb_000094_150 Hb_001103_060--Hb_000094_150 Hb_002383_050 Hb_002383_050 Hb_001103_060--Hb_002383_050 Hb_001059_060 Hb_001059_060 Hb_001103_060--Hb_001059_060 Hb_004577_010 Hb_004577_010 Hb_001103_060--Hb_004577_010 Hb_004162_220 Hb_004162_220 Hb_001103_060--Hb_004162_220 Hb_002010_090 Hb_002010_090 Hb_001103_060--Hb_002010_090 Hb_002965_080 Hb_002965_080 Hb_000027_140--Hb_002965_080 Hb_001198_130 Hb_001198_130 Hb_000027_140--Hb_001198_130 Hb_000329_740 Hb_000329_740 Hb_000027_140--Hb_000329_740 Hb_001386_020 Hb_001386_020 Hb_000027_140--Hb_001386_020 Hb_000923_100 Hb_000923_100 Hb_000027_140--Hb_000923_100 Hb_001168_070 Hb_001168_070 Hb_000027_140--Hb_001168_070 Hb_000170_160 Hb_000170_160 Hb_003750_130--Hb_000170_160 Hb_001277_340 Hb_001277_340 Hb_003750_130--Hb_001277_340 Hb_000673_010 Hb_000673_010 Hb_003750_130--Hb_000673_010 Hb_001766_070 Hb_001766_070 Hb_003750_130--Hb_001766_070 Hb_001828_120 Hb_001828_120 Hb_003750_130--Hb_001828_120 Hb_000008_280 Hb_000008_280 Hb_003750_130--Hb_000008_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0233324 0.0840436 0.100164 0.0311757 0.0525749 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0854881 0 0 0.0269597 0.138818

CAGE analysis