Hb_026205_030

Information

Type -
Description -
Location Contig26205: 31518-36038
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026205_030 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_001377_170 0.184693578 - - hypothetical protein JCGZ_14264 [Jatropha curcas]
3 Hb_000453_280 0.2484733695 - - negative cofactor 2 transcriptional co-repressor, putative [Ricinus communis]
4 Hb_001925_070 0.2553484687 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
5 Hb_004767_020 0.2636619109 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
6 Hb_001103_060 0.2662002894 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
7 Hb_134932_010 0.2697664264 - - PREDICTED: wall-associated receptor kinase-like 1, partial [Populus euphratica]
8 Hb_109515_010 0.2711494613 - - -
9 Hb_002768_080 0.271570595 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
10 Hb_002383_050 0.2739734579 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
11 Hb_002010_050 0.2827301278 - - conserved hypothetical protein [Ricinus communis]
12 Hb_022256_070 0.2835917769 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
13 Hb_001386_020 0.2837352592 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004648_030 0.2889510817 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
15 Hb_012539_040 0.2906555745 transcription factor TF Family: CPP hypothetical protein JCGZ_07765 [Jatropha curcas]
16 Hb_004994_190 0.2913156198 - - PREDICTED: (+)-neomenthol dehydrogenase-like [Jatropha curcas]
17 Hb_010614_010 0.2949943727 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
18 Hb_000027_140 0.2975712938 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
19 Hb_003020_300 0.2984295856 - - conserved hypothetical protein [Ricinus communis]
20 Hb_119327_010 0.3006032824 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_026205_030 Hb_026205_030 Hb_001377_170 Hb_001377_170 Hb_026205_030--Hb_001377_170 Hb_000453_280 Hb_000453_280 Hb_026205_030--Hb_000453_280 Hb_001925_070 Hb_001925_070 Hb_026205_030--Hb_001925_070 Hb_004767_020 Hb_004767_020 Hb_026205_030--Hb_004767_020 Hb_001103_060 Hb_001103_060 Hb_026205_030--Hb_001103_060 Hb_134932_010 Hb_134932_010 Hb_026205_030--Hb_134932_010 Hb_001377_170--Hb_001925_070 Hb_143629_140 Hb_143629_140 Hb_001377_170--Hb_143629_140 Hb_001377_170--Hb_001103_060 Hb_000027_140 Hb_000027_140 Hb_001377_170--Hb_000027_140 Hb_003750_130 Hb_003750_130 Hb_001377_170--Hb_003750_130 Hb_001556_020 Hb_001556_020 Hb_000453_280--Hb_001556_020 Hb_001386_020 Hb_001386_020 Hb_000453_280--Hb_001386_020 Hb_002383_050 Hb_002383_050 Hb_000453_280--Hb_002383_050 Hb_000175_270 Hb_000175_270 Hb_000453_280--Hb_000175_270 Hb_000753_140 Hb_000753_140 Hb_000453_280--Hb_000753_140 Hb_000808_260 Hb_000808_260 Hb_000453_280--Hb_000808_260 Hb_002552_020 Hb_002552_020 Hb_001925_070--Hb_002552_020 Hb_000254_110 Hb_000254_110 Hb_001925_070--Hb_000254_110 Hb_001925_070--Hb_000808_260 Hb_012539_040 Hb_012539_040 Hb_001925_070--Hb_012539_040 Hb_004648_030 Hb_004648_030 Hb_001925_070--Hb_004648_030 Hb_005917_030 Hb_005917_030 Hb_001925_070--Hb_005917_030 Hb_064293_010 Hb_064293_010 Hb_004767_020--Hb_064293_010 Hb_119327_010 Hb_119327_010 Hb_004767_020--Hb_119327_010 Hb_002849_120 Hb_002849_120 Hb_004767_020--Hb_002849_120 Hb_171168_010 Hb_171168_010 Hb_004767_020--Hb_171168_010 Hb_007113_020 Hb_007113_020 Hb_004767_020--Hb_007113_020 Hb_000680_020 Hb_000680_020 Hb_004767_020--Hb_000680_020 Hb_000094_150 Hb_000094_150 Hb_001103_060--Hb_000094_150 Hb_001103_060--Hb_002383_050 Hb_001059_060 Hb_001059_060 Hb_001103_060--Hb_001059_060 Hb_004577_010 Hb_004577_010 Hb_001103_060--Hb_004577_010 Hb_004162_220 Hb_004162_220 Hb_001103_060--Hb_004162_220 Hb_002010_090 Hb_002010_090 Hb_001103_060--Hb_002010_090 Hb_004994_190 Hb_004994_190 Hb_134932_010--Hb_004994_190 Hb_000685_130 Hb_000685_130 Hb_134932_010--Hb_000685_130 Hb_000412_090 Hb_000412_090 Hb_134932_010--Hb_000412_090 Hb_086002_010 Hb_086002_010 Hb_134932_010--Hb_086002_010 Hb_134932_010--Hb_001556_020 Hb_002783_140 Hb_002783_140 Hb_134932_010--Hb_002783_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0153564 0.0166084 0.00326158 0.00445076 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0100742 0 0 0.00627849 0.0170051

CAGE analysis