Hb_003127_050

Information

Type -
Description -
Location Contig3127: 141619-149296
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003127_050 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_004102_020 0.1939298145 - - -
3 Hb_055314_010 0.2658044078 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_002311_120 0.2679462576 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000392_410 0.2722413583 - - PREDICTED: uncharacterized protein LOC104882159 [Vitis vinifera]
6 Hb_000039_120 0.27486579 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
7 Hb_134932_010 0.2891728273 - - PREDICTED: wall-associated receptor kinase-like 1, partial [Populus euphratica]
8 Hb_010607_010 0.3104025548 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
9 Hb_026205_030 0.3124897372 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_000025_420 0.314852185 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002010_050 0.3180069427 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005240_010 0.3205471262 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
13 Hb_001999_050 0.3235539716 rubber biosynthesis Gene Name: CPT7 PREDICTED: dehydrodolichyl diphosphate synthase 2 [Jatropha curcas]
14 Hb_001925_070 0.3255498459 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
15 Hb_034013_010 0.3256662733 - - hypothetical protein JCGZ_21944 [Jatropha curcas]
16 Hb_005772_020 0.3271592791 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
17 Hb_171900_110 0.3289412511 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT3-like [Populus euphratica]
18 Hb_000032_590 0.330425294 - - PREDICTED: glutaredoxin domain-containing cysteine-rich protein 1 [Jatropha curcas]
19 Hb_000230_250 0.331216746 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
20 Hb_000594_150 0.3353393722 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_003127_050 Hb_003127_050 Hb_004102_020 Hb_004102_020 Hb_003127_050--Hb_004102_020 Hb_055314_010 Hb_055314_010 Hb_003127_050--Hb_055314_010 Hb_002311_120 Hb_002311_120 Hb_003127_050--Hb_002311_120 Hb_000392_410 Hb_000392_410 Hb_003127_050--Hb_000392_410 Hb_000039_120 Hb_000039_120 Hb_003127_050--Hb_000039_120 Hb_134932_010 Hb_134932_010 Hb_003127_050--Hb_134932_010 Hb_004102_020--Hb_000392_410 Hb_000025_420 Hb_000025_420 Hb_004102_020--Hb_000025_420 Hb_004102_020--Hb_002311_120 Hb_026205_030 Hb_026205_030 Hb_004102_020--Hb_026205_030 Hb_137701_020 Hb_137701_020 Hb_004102_020--Hb_137701_020 Hb_181402_010 Hb_181402_010 Hb_055314_010--Hb_181402_010 Hb_034013_010 Hb_034013_010 Hb_055314_010--Hb_034013_010 Hb_000002_090 Hb_000002_090 Hb_055314_010--Hb_000002_090 Hb_055314_010--Hb_000039_120 Hb_010055_020 Hb_010055_020 Hb_055314_010--Hb_010055_020 Hb_000399_030 Hb_000399_030 Hb_002311_120--Hb_000399_030 Hb_130469_010 Hb_130469_010 Hb_002311_120--Hb_130469_010 Hb_001198_130 Hb_001198_130 Hb_002311_120--Hb_001198_130 Hb_005725_040 Hb_005725_040 Hb_002311_120--Hb_005725_040 Hb_019762_060 Hb_019762_060 Hb_002311_120--Hb_019762_060 Hb_000392_410--Hb_000025_420 Hb_012807_070 Hb_012807_070 Hb_000392_410--Hb_012807_070 Hb_130579_050 Hb_130579_050 Hb_000392_410--Hb_130579_050 Hb_000574_090 Hb_000574_090 Hb_000392_410--Hb_000574_090 Hb_001863_410 Hb_001863_410 Hb_000392_410--Hb_001863_410 Hb_001205_170 Hb_001205_170 Hb_000392_410--Hb_001205_170 Hb_171900_110 Hb_171900_110 Hb_000039_120--Hb_171900_110 Hb_000780_160 Hb_000780_160 Hb_000039_120--Hb_000780_160 Hb_000032_590 Hb_000032_590 Hb_000039_120--Hb_000032_590 Hb_000311_110 Hb_000311_110 Hb_000039_120--Hb_000311_110 Hb_001999_050 Hb_001999_050 Hb_000039_120--Hb_001999_050 Hb_004126_050 Hb_004126_050 Hb_000039_120--Hb_004126_050 Hb_004994_190 Hb_004994_190 Hb_134932_010--Hb_004994_190 Hb_000685_130 Hb_000685_130 Hb_134932_010--Hb_000685_130 Hb_000412_090 Hb_000412_090 Hb_134932_010--Hb_000412_090 Hb_086002_010 Hb_086002_010 Hb_134932_010--Hb_086002_010 Hb_001556_020 Hb_001556_020 Hb_134932_010--Hb_001556_020 Hb_002783_140 Hb_002783_140 Hb_134932_010--Hb_002783_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0165972 0.00713655 0.00313416 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0103906 0 0 0 0.0175325

CAGE analysis