Hb_000392_410

Information

Type -
Description -
Location Contig392: 342242-344660
Sequence    

Annotation

kegg
ID vvi:104882159
description uncharacterized LOC104882159
nr
ID XP_010662546.1
description PREDICTED: uncharacterized protein LOC104882159 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5BVC1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027174 PE=4 SV=1
Gene Ontology
ID GO:0003676
description gag-pol polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_410 0.0 - - PREDICTED: uncharacterized protein LOC104882159 [Vitis vinifera]
2 Hb_000025_420 0.1922890516 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012807_070 0.2240286964 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
4 Hb_130579_050 0.2302254608 - - hypothetical protein JCGZ_25577 [Jatropha curcas]
5 Hb_000574_090 0.2352124226 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
6 Hb_001863_410 0.2383756346 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_001205_170 0.2433815121 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
8 Hb_002025_240 0.2455543394 - - -
9 Hb_004102_020 0.2457759763 - - -
10 Hb_017098_020 0.253567257 - - Zinc finger protein GIS2 [Medicago truncatula]
11 Hb_090889_010 0.253700951 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
12 Hb_003062_020 0.2552696194 - - Polyprotein, putative [Solanum demissum]
13 Hb_004880_120 0.2588773361 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
14 Hb_011218_030 0.2603514411 - - hypothetical protein VITISV_002891 [Vitis vinifera]
15 Hb_118046_010 0.2604478746 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
16 Hb_000028_270 0.2612316376 - - -
17 Hb_009780_010 0.2623059512 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003442_120 0.2643633221 - - hypothetical protein VITISV_019818 [Vitis vinifera]
19 Hb_006615_210 0.2649900753 - - PREDICTED: uncharacterized protein LOC105640677 isoform X2 [Jatropha curcas]
20 Hb_003106_250 0.2651891608 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]

Gene co-expression network

sample Hb_000392_410 Hb_000392_410 Hb_000025_420 Hb_000025_420 Hb_000392_410--Hb_000025_420 Hb_012807_070 Hb_012807_070 Hb_000392_410--Hb_012807_070 Hb_130579_050 Hb_130579_050 Hb_000392_410--Hb_130579_050 Hb_000574_090 Hb_000574_090 Hb_000392_410--Hb_000574_090 Hb_001863_410 Hb_001863_410 Hb_000392_410--Hb_001863_410 Hb_001205_170 Hb_001205_170 Hb_000392_410--Hb_001205_170 Hb_017098_020 Hb_017098_020 Hb_000025_420--Hb_017098_020 Hb_009780_010 Hb_009780_010 Hb_000025_420--Hb_009780_010 Hb_000025_420--Hb_012807_070 Hb_010091_030 Hb_010091_030 Hb_000025_420--Hb_010091_030 Hb_019026_040 Hb_019026_040 Hb_000025_420--Hb_019026_040 Hb_012807_070--Hb_017098_020 Hb_003062_020 Hb_003062_020 Hb_012807_070--Hb_003062_020 Hb_012807_070--Hb_009780_010 Hb_090889_010 Hb_090889_010 Hb_012807_070--Hb_090889_010 Hb_012807_070--Hb_130579_050 Hb_004880_120 Hb_004880_120 Hb_012807_070--Hb_004880_120 Hb_002025_240 Hb_002025_240 Hb_130579_050--Hb_002025_240 Hb_003442_120 Hb_003442_120 Hb_130579_050--Hb_003442_120 Hb_118046_010 Hb_118046_010 Hb_130579_050--Hb_118046_010 Hb_004063_010 Hb_004063_010 Hb_130579_050--Hb_004063_010 Hb_003727_060 Hb_003727_060 Hb_130579_050--Hb_003727_060 Hb_000028_270 Hb_000028_270 Hb_130579_050--Hb_000028_270 Hb_172426_010 Hb_172426_010 Hb_000574_090--Hb_172426_010 Hb_000236_430 Hb_000236_430 Hb_000574_090--Hb_000236_430 Hb_034013_010 Hb_034013_010 Hb_000574_090--Hb_034013_010 Hb_000574_090--Hb_001205_170 Hb_004007_230 Hb_004007_230 Hb_000574_090--Hb_004007_230 Hb_002110_110 Hb_002110_110 Hb_000574_090--Hb_002110_110 Hb_000856_120 Hb_000856_120 Hb_001863_410--Hb_000856_120 Hb_002154_080 Hb_002154_080 Hb_001863_410--Hb_002154_080 Hb_001711_040 Hb_001711_040 Hb_001863_410--Hb_001711_040 Hb_001863_410--Hb_118046_010 Hb_001863_410--Hb_003442_120 Hb_001863_410--Hb_000028_270 Hb_001999_050 Hb_001999_050 Hb_001205_170--Hb_001999_050 Hb_004884_210 Hb_004884_210 Hb_001205_170--Hb_004884_210 Hb_007575_020 Hb_007575_020 Hb_001205_170--Hb_007575_020 Hb_001205_170--Hb_172426_010 Hb_027337_050 Hb_027337_050 Hb_001205_170--Hb_027337_050 Hb_001205_170--Hb_034013_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0960836 0.0389744 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0236163 0 0 0.0147911 0.117664

CAGE analysis