Hb_000025_420

Information

Type -
Description -
Location Contig25: 393104-393709
Sequence    

Annotation

kegg
ID rcu:RCOM_1892420
description hypothetical protein
nr
ID XP_002536881.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TF62
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1892420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_420 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000392_410 0.1922890516 - - PREDICTED: uncharacterized protein LOC104882159 [Vitis vinifera]
3 Hb_017098_020 0.213874865 - - Zinc finger protein GIS2 [Medicago truncatula]
4 Hb_009780_010 0.2311703066 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012807_070 0.2333252457 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
6 Hb_010091_030 0.2472212448 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
7 Hb_019026_040 0.2519350488 - - S-locus lectin protein kinase family protein [Theobroma cacao]
8 Hb_001631_110 0.254126216 - - PREDICTED: LOW QUALITY PROTEIN: gamma-glutamyltranspeptidase 1-like [Populus euphratica]
9 Hb_004241_170 0.2545224831 - - PREDICTED: uncharacterized protein LOC105633220 [Jatropha curcas]
10 Hb_003062_020 0.2550923176 - - Polyprotein, putative [Solanum demissum]
11 Hb_008341_010 0.2570775962 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
12 Hb_010614_010 0.2577990375 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
13 Hb_000347_380 0.2583944638 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_002768_080 0.2593299136 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
15 Hb_134932_010 0.2594268955 - - PREDICTED: wall-associated receptor kinase-like 1, partial [Populus euphratica]
16 Hb_002025_240 0.260870893 - - -
17 Hb_000815_150 0.2611826171 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
18 Hb_004994_190 0.2629194115 - - PREDICTED: (+)-neomenthol dehydrogenase-like [Jatropha curcas]
19 Hb_004880_120 0.2660226196 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
20 Hb_004102_020 0.2684293449 - - -

Gene co-expression network

sample Hb_000025_420 Hb_000025_420 Hb_000392_410 Hb_000392_410 Hb_000025_420--Hb_000392_410 Hb_017098_020 Hb_017098_020 Hb_000025_420--Hb_017098_020 Hb_009780_010 Hb_009780_010 Hb_000025_420--Hb_009780_010 Hb_012807_070 Hb_012807_070 Hb_000025_420--Hb_012807_070 Hb_010091_030 Hb_010091_030 Hb_000025_420--Hb_010091_030 Hb_019026_040 Hb_019026_040 Hb_000025_420--Hb_019026_040 Hb_000392_410--Hb_012807_070 Hb_130579_050 Hb_130579_050 Hb_000392_410--Hb_130579_050 Hb_000574_090 Hb_000574_090 Hb_000392_410--Hb_000574_090 Hb_001863_410 Hb_001863_410 Hb_000392_410--Hb_001863_410 Hb_001205_170 Hb_001205_170 Hb_000392_410--Hb_001205_170 Hb_017098_020--Hb_012807_070 Hb_017098_020--Hb_009780_010 Hb_003062_020 Hb_003062_020 Hb_017098_020--Hb_003062_020 Hb_001631_110 Hb_001631_110 Hb_017098_020--Hb_001631_110 Hb_011038_020 Hb_011038_020 Hb_017098_020--Hb_011038_020 Hb_090889_010 Hb_090889_010 Hb_017098_020--Hb_090889_010 Hb_009780_010--Hb_003062_020 Hb_009780_010--Hb_012807_070 Hb_009780_010--Hb_011038_020 Hb_009780_010--Hb_090889_010 Hb_101034_020 Hb_101034_020 Hb_009780_010--Hb_101034_020 Hb_012807_070--Hb_003062_020 Hb_012807_070--Hb_090889_010 Hb_012807_070--Hb_130579_050 Hb_004880_120 Hb_004880_120 Hb_012807_070--Hb_004880_120 Hb_008341_010 Hb_008341_010 Hb_010091_030--Hb_008341_010 Hb_004241_170 Hb_004241_170 Hb_010091_030--Hb_004241_170 Hb_010091_030--Hb_001631_110 Hb_003811_030 Hb_003811_030 Hb_010091_030--Hb_003811_030 Hb_010175_050 Hb_010175_050 Hb_010091_030--Hb_010175_050 Hb_164146_020 Hb_164146_020 Hb_010091_030--Hb_164146_020 Hb_019026_040--Hb_003811_030 Hb_107552_020 Hb_107552_020 Hb_019026_040--Hb_107552_020 Hb_019026_040--Hb_010175_050 Hb_000347_380 Hb_000347_380 Hb_019026_040--Hb_000347_380 Hb_036492_020 Hb_036492_020 Hb_019026_040--Hb_036492_020 Hb_004007_210 Hb_004007_210 Hb_019026_040--Hb_004007_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.670284 0.29773 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0994952 0 0 0.0640982 0.303136

CAGE analysis