Hb_005725_040

Information

Type -
Description -
Location Contig5725: 6782-7051
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_040 0.0 - - -
2 Hb_002107_090 0.2154063558 transcription factor TF Family: bZIP Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]
3 Hb_010315_080 0.2169784181 - - -
4 Hb_029622_030 0.2323965788 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_005194_040 0.2430592565 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
6 Hb_000152_760 0.2440190384 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000212_300 0.2459267791 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
8 Hb_002450_140 0.2489682767 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
9 Hb_000152_150 0.2515168941 - - PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]
10 Hb_000445_100 0.2540275474 - - PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
11 Hb_003090_150 0.2600513987 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
12 Hb_005694_130 0.2617911451 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
13 Hb_001894_160 0.2623967046 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009411_040 0.2630725498 - - -
15 Hb_000123_140 0.2638056941 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
16 Hb_003750_130 0.2675318398 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000107_480 0.2705363469 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
18 Hb_015026_040 0.2706317642 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
19 Hb_000928_250 0.2707591211 - - calcium ion binding protein, putative [Ricinus communis]
20 Hb_000671_060 0.2708681858 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005725_040 Hb_005725_040 Hb_002107_090 Hb_002107_090 Hb_005725_040--Hb_002107_090 Hb_010315_080 Hb_010315_080 Hb_005725_040--Hb_010315_080 Hb_029622_030 Hb_029622_030 Hb_005725_040--Hb_029622_030 Hb_005194_040 Hb_005194_040 Hb_005725_040--Hb_005194_040 Hb_000152_760 Hb_000152_760 Hb_005725_040--Hb_000152_760 Hb_000212_300 Hb_000212_300 Hb_005725_040--Hb_000212_300 Hb_000345_260 Hb_000345_260 Hb_002107_090--Hb_000345_260 Hb_002218_100 Hb_002218_100 Hb_002107_090--Hb_002218_100 Hb_000987_100 Hb_000987_100 Hb_002107_090--Hb_000987_100 Hb_000123_140 Hb_000123_140 Hb_002107_090--Hb_000123_140 Hb_002107_090--Hb_005194_040 Hb_009411_040 Hb_009411_040 Hb_002107_090--Hb_009411_040 Hb_008173_150 Hb_008173_150 Hb_010315_080--Hb_008173_150 Hb_010315_080--Hb_029622_030 Hb_001409_060 Hb_001409_060 Hb_010315_080--Hb_001409_060 Hb_003750_130 Hb_003750_130 Hb_010315_080--Hb_003750_130 Hb_000107_480 Hb_000107_480 Hb_010315_080--Hb_000107_480 Hb_015026_020 Hb_015026_020 Hb_029622_030--Hb_015026_020 Hb_000928_250 Hb_000928_250 Hb_029622_030--Hb_000928_250 Hb_000424_070 Hb_000424_070 Hb_029622_030--Hb_000424_070 Hb_003106_200 Hb_003106_200 Hb_029622_030--Hb_003106_200 Hb_000345_290 Hb_000345_290 Hb_029622_030--Hb_000345_290 Hb_029622_030--Hb_000212_300 Hb_005194_040--Hb_000424_070 Hb_005194_040--Hb_029622_030 Hb_006935_040 Hb_006935_040 Hb_005194_040--Hb_006935_040 Hb_000313_290 Hb_000313_290 Hb_005194_040--Hb_000313_290 Hb_006846_160 Hb_006846_160 Hb_005194_040--Hb_006846_160 Hb_000300_710 Hb_000300_710 Hb_005194_040--Hb_000300_710 Hb_000152_150 Hb_000152_150 Hb_000152_760--Hb_000152_150 Hb_002478_040 Hb_002478_040 Hb_000152_760--Hb_002478_040 Hb_010368_080 Hb_010368_080 Hb_000152_760--Hb_010368_080 Hb_006132_040 Hb_006132_040 Hb_000152_760--Hb_006132_040 Hb_091226_010 Hb_091226_010 Hb_000152_760--Hb_091226_010 Hb_000979_060 Hb_000979_060 Hb_000152_760--Hb_000979_060 Hb_001369_030 Hb_001369_030 Hb_000212_300--Hb_001369_030 Hb_000062_360 Hb_000062_360 Hb_000212_300--Hb_000062_360 Hb_027380_210 Hb_027380_210 Hb_000212_300--Hb_027380_210 Hb_011671_110 Hb_011671_110 Hb_000212_300--Hb_011671_110 Hb_000212_300--Hb_015026_020 Hb_005941_020 Hb_005941_020 Hb_000212_300--Hb_005941_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.426885 5.85301 6.6663 1.56578 2.12116 0.628229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.47655 0.392539 0.525418 0 2.266

CAGE analysis