Hb_130469_010

Information

Type -
Description -
Location Contig130469: 37-276
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa023430mg
description hypothetical protein
nr
ID AGJ52171.1
description pleiotropic drug resistance ABC transporter family protein, partial [Eleutherococcus senticosus]
swissprot
ID Q76CU2
description Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1
trembl
ID A0A0A9DEF9
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0016020
description pleiotropic drug resistance protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09072: 39-564
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130469_010 0.0 - - pleiotropic drug resistance ABC transporter family protein, partial [Eleutherococcus senticosus]
2 Hb_006501_130 0.2101881961 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002759_080 0.2212416668 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
4 Hb_010638_010 0.2247835007 - - PREDICTED: RNA polymerase sigma factor sigC [Jatropha curcas]
5 Hb_002499_050 0.2372075094 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_001379_120 0.2374205566 - - hypothetical protein POPTR_0001s29730g [Populus trichocarpa]
7 Hb_000638_220 0.2391208962 - - PREDICTED: photosystem I reaction center subunit N, chloroplastic [Jatropha curcas]
8 Hb_014068_010 0.2405993027 - - PREDICTED: phototropin-1 [Jatropha curcas]
9 Hb_004994_280 0.2447111182 - - hypothetical protein JCGZ_14421 [Jatropha curcas]
10 Hb_007076_010 0.244750083 - - calcium-dependent protein kinase, putative [Ricinus communis]
11 Hb_005694_050 0.2457337856 - - NC domain-containing family protein [Populus trichocarpa]
12 Hb_000961_060 0.2467603201 - - uvb-resistance protein uvr8, putative [Ricinus communis]
13 Hb_002030_020 0.2472333555 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]
14 Hb_000991_030 0.2489169339 - - PREDICTED: uncharacterized protein LOC105122436 [Populus euphratica]
15 Hb_000123_360 0.2523692052 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_001983_040 0.2525870956 - - PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
17 Hb_048141_050 0.253281118 - - hypothetical protein PRUPE_ppa009153mg [Prunus persica]
18 Hb_000399_030 0.2537109102 - - PREDICTED: uncharacterized protein LOC105634579 [Jatropha curcas]
19 Hb_004308_030 0.2544692412 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
20 Hb_003905_020 0.2545618658 - - PREDICTED: uncharacterized protein LOC105131878 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_130469_010 Hb_130469_010 Hb_006501_130 Hb_006501_130 Hb_130469_010--Hb_006501_130 Hb_002759_080 Hb_002759_080 Hb_130469_010--Hb_002759_080 Hb_010638_010 Hb_010638_010 Hb_130469_010--Hb_010638_010 Hb_002499_050 Hb_002499_050 Hb_130469_010--Hb_002499_050 Hb_001379_120 Hb_001379_120 Hb_130469_010--Hb_001379_120 Hb_000638_220 Hb_000638_220 Hb_130469_010--Hb_000638_220 Hb_001519_090 Hb_001519_090 Hb_006501_130--Hb_001519_090 Hb_002042_180 Hb_002042_180 Hb_006501_130--Hb_002042_180 Hb_003207_120 Hb_003207_120 Hb_006501_130--Hb_003207_120 Hb_001258_130 Hb_001258_130 Hb_006501_130--Hb_001258_130 Hb_005276_140 Hb_005276_140 Hb_006501_130--Hb_005276_140 Hb_011671_050 Hb_011671_050 Hb_006501_130--Hb_011671_050 Hb_000302_230 Hb_000302_230 Hb_002759_080--Hb_000302_230 Hb_000123_360 Hb_000123_360 Hb_002759_080--Hb_000123_360 Hb_003905_020 Hb_003905_020 Hb_002759_080--Hb_003905_020 Hb_033312_120 Hb_033312_120 Hb_002759_080--Hb_033312_120 Hb_002759_080--Hb_000638_220 Hb_000120_490 Hb_000120_490 Hb_002759_080--Hb_000120_490 Hb_010638_010--Hb_001379_120 Hb_005694_050 Hb_005694_050 Hb_010638_010--Hb_005694_050 Hb_002272_220 Hb_002272_220 Hb_010638_010--Hb_002272_220 Hb_000329_500 Hb_000329_500 Hb_010638_010--Hb_000329_500 Hb_000206_170 Hb_000206_170 Hb_010638_010--Hb_000206_170 Hb_001163_110 Hb_001163_110 Hb_010638_010--Hb_001163_110 Hb_000084_210 Hb_000084_210 Hb_002499_050--Hb_000084_210 Hb_001369_590 Hb_001369_590 Hb_002499_050--Hb_001369_590 Hb_006620_030 Hb_006620_030 Hb_002499_050--Hb_006620_030 Hb_000282_020 Hb_000282_020 Hb_002499_050--Hb_000282_020 Hb_005365_040 Hb_005365_040 Hb_002499_050--Hb_005365_040 Hb_048141_050 Hb_048141_050 Hb_002499_050--Hb_048141_050 Hb_001379_120--Hb_000329_500 Hb_000961_060 Hb_000961_060 Hb_001379_120--Hb_000961_060 Hb_003517_110 Hb_003517_110 Hb_001379_120--Hb_003517_110 Hb_001379_120--Hb_001163_110 Hb_001623_380 Hb_001623_380 Hb_001379_120--Hb_001623_380 Hb_110266_010 Hb_110266_010 Hb_000638_220--Hb_110266_010 Hb_000345_400 Hb_000345_400 Hb_000638_220--Hb_000345_400 Hb_000962_090 Hb_000962_090 Hb_000638_220--Hb_000962_090 Hb_092516_010 Hb_092516_010 Hb_000638_220--Hb_092516_010 Hb_007462_020 Hb_007462_020 Hb_000638_220--Hb_007462_020 Hb_000638_220--Hb_000123_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.900094 5.81487 1.81626 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43116 0 0 0 2.24913

CAGE analysis