Hb_002081_180

Information

Type -
Description -
Location Contig2081: 291948-299206
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa006101mg
description hypothetical protein
nr
ID XP_007201024.1
description hypothetical protein PRUPE_ppa006101mg [Prunus persica]
swissprot
ID P52716
description Uncharacterized serine carboxypeptidase F32A5.3 OS=Caenorhabditis elegans GN=F32A5.3 PE=1 SV=1
trembl
ID M1BZY1
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400022103 PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002081_180 0.0 - - hypothetical protein PRUPE_ppa006101mg [Prunus persica]
2 Hb_003531_010 0.1433726681 - - scab resistance family protein [Populus trichocarpa]
3 Hb_005127_040 0.1809130611 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
4 Hb_178711_010 0.2095241676 - - hypothetical protein PHAVU_003G094000g [Phaseolus vulgaris]
5 Hb_029622_070 0.2239817631 - - -
6 Hb_027287_010 0.2584939272 - - conserved hypothetical protein [Ricinus communis]
7 Hb_116367_010 0.2710754051 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Pyrus x bretschneideri]
8 Hb_000960_020 0.2819695915 - - -
9 Hb_002078_190 0.2970180462 - - conserved hypothetical protein [Ricinus communis]
10 Hb_157968_010 0.301661118 - - Disease resistance protein RPS5, putative [Ricinus communis]
11 Hb_072290_010 0.3077182853 - - PREDICTED: GRF1-interacting factor 1 [Gossypium raimondii]
12 Hb_000304_040 0.3114105062 - - PREDICTED: nicotianamine synthase-like [Jatropha curcas]
13 Hb_174547_010 0.3122422889 - - -
14 Hb_048183_010 0.3209182032 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
15 Hb_148658_010 0.3233699383 - - -
16 Hb_003906_030 0.3276051719 - - mads box protein, putative [Ricinus communis]
17 Hb_022534_010 0.3310408774 - - hypothetical protein CICLE_v10000066mg [Citrus clementina]
18 Hb_004458_010 0.3373665565 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
19 Hb_001147_080 0.3374241089 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_002984_020 0.3390823364 - - hypothetical protein EUGRSUZ_J02661 [Eucalyptus grandis]

Gene co-expression network

sample Hb_002081_180 Hb_002081_180 Hb_003531_010 Hb_003531_010 Hb_002081_180--Hb_003531_010 Hb_005127_040 Hb_005127_040 Hb_002081_180--Hb_005127_040 Hb_178711_010 Hb_178711_010 Hb_002081_180--Hb_178711_010 Hb_029622_070 Hb_029622_070 Hb_002081_180--Hb_029622_070 Hb_027287_010 Hb_027287_010 Hb_002081_180--Hb_027287_010 Hb_116367_010 Hb_116367_010 Hb_002081_180--Hb_116367_010 Hb_003531_010--Hb_178711_010 Hb_003531_010--Hb_116367_010 Hb_003531_010--Hb_005127_040 Hb_072290_010 Hb_072290_010 Hb_003531_010--Hb_072290_010 Hb_003531_010--Hb_029622_070 Hb_000304_040 Hb_000304_040 Hb_005127_040--Hb_000304_040 Hb_004458_010 Hb_004458_010 Hb_005127_040--Hb_004458_010 Hb_005127_040--Hb_178711_010 Hb_000983_180 Hb_000983_180 Hb_005127_040--Hb_000983_180 Hb_178711_010--Hb_029622_070 Hb_003925_130 Hb_003925_130 Hb_178711_010--Hb_003925_130 Hb_178711_010--Hb_000304_040 Hb_048183_010 Hb_048183_010 Hb_178711_010--Hb_048183_010 Hb_029622_070--Hb_003925_130 Hb_029622_070--Hb_048183_010 Hb_002984_030 Hb_002984_030 Hb_029622_070--Hb_002984_030 Hb_174547_010 Hb_174547_010 Hb_027287_010--Hb_174547_010 Hb_148658_010 Hb_148658_010 Hb_027287_010--Hb_148658_010 Hb_027287_010--Hb_116367_010 Hb_000193_030 Hb_000193_030 Hb_027287_010--Hb_000193_030 Hb_000066_180 Hb_000066_180 Hb_027287_010--Hb_000066_180 Hb_003641_010 Hb_003641_010 Hb_116367_010--Hb_003641_010 Hb_116367_010--Hb_148658_010 Hb_013040_010 Hb_013040_010 Hb_116367_010--Hb_013040_010 Hb_001660_140 Hb_001660_140 Hb_116367_010--Hb_001660_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0425988 0 0.0421224 0 0.0300538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis