Hb_007889_050

Information

Type -
Description -
Location Contig7889: 49609-50467
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa026493mg
description hypothetical protein
nr
ID KHG03422.1
description Kynurenine formamidase [Gossypium arboreum]
swissprot
ID P0C8P4
description Kynurenine formamidase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=kynB PE=1 SV=1
trembl
ID W5EY45
description Uncharacterized protein OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID GO:0004061
description PREDICTED: uncharacterized protein LOC104445128 isoform X2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58202: 49106-50544 , PASA_asmbl_58203: 24669-50460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007889_050 0.0 - - Kynurenine formamidase [Gossypium arboreum]
2 Hb_002078_190 0.2110407806 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000869_060 0.2349310325 - - hypothetical protein L484_003245 [Morus notabilis]
4 Hb_000893_010 0.2621997352 - - PREDICTED: uncharacterized protein LOC105135422 [Populus euphratica]
5 Hb_072290_010 0.2625228799 - - PREDICTED: GRF1-interacting factor 1 [Gossypium raimondii]
6 Hb_106873_020 0.2733027328 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
7 Hb_001950_040 0.2758824836 - - -
8 Hb_003025_060 0.2835295587 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
9 Hb_157968_010 0.2836421579 - - Disease resistance protein RPS5, putative [Ricinus communis]
10 Hb_022614_010 0.2847504783 - - -
11 Hb_001708_010 0.2848578177 - - PREDICTED: putative disease resistance protein At4g11170 [Malus domestica]
12 Hb_060054_010 0.2878555318 - - NADH-ubiquinone oxidoreductase subunit B17.2, putative [Ricinus communis]
13 Hb_006162_020 0.2886636181 - - -
14 Hb_025905_020 0.2908907016 - - major allergen Pru ar 1-like [Jatropha curcas]
15 Hb_068569_010 0.2934816267 - - -
16 Hb_134488_010 0.2958569748 - - -
17 Hb_048183_010 0.2970808165 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
18 Hb_177152_010 0.2978467998 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
19 Hb_000033_070 0.2978727342 - - unnamed protein product [Oryza sativa Japonica Group]
20 Hb_162090_010 0.2984241776 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]

Gene co-expression network

sample Hb_007889_050 Hb_007889_050 Hb_002078_190 Hb_002078_190 Hb_007889_050--Hb_002078_190 Hb_000869_060 Hb_000869_060 Hb_007889_050--Hb_000869_060 Hb_000893_010 Hb_000893_010 Hb_007889_050--Hb_000893_010 Hb_072290_010 Hb_072290_010 Hb_007889_050--Hb_072290_010 Hb_106873_020 Hb_106873_020 Hb_007889_050--Hb_106873_020 Hb_001950_040 Hb_001950_040 Hb_007889_050--Hb_001950_040 Hb_157968_010 Hb_157968_010 Hb_002078_190--Hb_157968_010 Hb_148658_010 Hb_148658_010 Hb_002078_190--Hb_148658_010 Hb_001708_010 Hb_001708_010 Hb_002078_190--Hb_001708_010 Hb_002078_190--Hb_001950_040 Hb_116367_010 Hb_116367_010 Hb_002078_190--Hb_116367_010 Hb_009119_030 Hb_009119_030 Hb_000869_060--Hb_009119_030 Hb_004935_080 Hb_004935_080 Hb_000869_060--Hb_004935_080 Hb_000130_190 Hb_000130_190 Hb_000869_060--Hb_000130_190 Hb_001252_200 Hb_001252_200 Hb_000869_060--Hb_001252_200 Hb_144550_020 Hb_144550_020 Hb_000869_060--Hb_144550_020 Hb_169329_010 Hb_169329_010 Hb_000869_060--Hb_169329_010 Hb_004705_090 Hb_004705_090 Hb_000893_010--Hb_004705_090 Hb_004531_180 Hb_004531_180 Hb_000893_010--Hb_004531_180 Hb_104169_010 Hb_104169_010 Hb_000893_010--Hb_104169_010 Hb_000893_010--Hb_072290_010 Hb_006816_110 Hb_006816_110 Hb_000893_010--Hb_006816_110 Hb_000521_070 Hb_000521_070 Hb_000893_010--Hb_000521_070 Hb_072290_010--Hb_104169_010 Hb_048183_010 Hb_048183_010 Hb_072290_010--Hb_048183_010 Hb_072290_010--Hb_004705_090 Hb_002984_020 Hb_002984_020 Hb_072290_010--Hb_002984_020 Hb_133648_010 Hb_133648_010 Hb_072290_010--Hb_133648_010 Hb_178711_010 Hb_178711_010 Hb_072290_010--Hb_178711_010 Hb_000589_230 Hb_000589_230 Hb_106873_020--Hb_000589_230 Hb_060054_010 Hb_060054_010 Hb_106873_020--Hb_060054_010 Hb_003025_060 Hb_003025_060 Hb_106873_020--Hb_003025_060 Hb_106873_020--Hb_148658_010 Hb_081815_010 Hb_081815_010 Hb_106873_020--Hb_081815_010 Hb_005723_070 Hb_005723_070 Hb_106873_020--Hb_005723_070 Hb_116638_010 Hb_116638_010 Hb_001950_040--Hb_116638_010 Hb_007083_020 Hb_007083_020 Hb_001950_040--Hb_007083_020 Hb_000086_100 Hb_000086_100 Hb_001950_040--Hb_000086_100 Hb_002974_050 Hb_002974_050 Hb_001950_040--Hb_002974_050 Hb_003371_170 Hb_003371_170 Hb_001950_040--Hb_003371_170 Hb_001950_040--Hb_169329_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.845 160.841 1.21092 515.438 96.6612 314.295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.5748 5.0121 0.419256 0 10.4703

CAGE analysis