Hb_081228_010

Information

Type -
Description -
Location Contig81228: 1136-1644
Sequence    

Annotation

kegg
ID pop:POPTR_0001s39130g
description POPTRDRAFT_829917; SENESCENCE-RELATED GENE 1 family protein
nr
ID XP_002300453.1
description SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID B9GHE6
description SENESCENCE-RELATED GENE 1 family protein OS=Populus trichocarpa GN=POPTR_0001s39130g PE=3 SV=1
Gene Ontology
ID GO:0045431
description protein srg1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_081228_010 0.0 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
2 Hb_001248_180 0.075222794 - - -
3 Hb_004899_380 0.1145613773 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000628_060 0.1192093389 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
5 Hb_004474_020 0.1233750291 - - aldo-keto reductase, putative [Ricinus communis]
6 Hb_048987_020 0.1266881174 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
7 Hb_001006_130 0.1314474724 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
8 Hb_000224_020 0.1361358698 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
9 Hb_001006_080 0.1367602681 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
10 Hb_104362_020 0.14299438 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
11 Hb_008406_050 0.1458503614 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 2 [Jatropha curcas]
12 Hb_151027_010 0.1458965288 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
13 Hb_174829_030 0.1466937228 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003878_130 0.1467707997 - - -
15 Hb_000696_120 0.1469146817 - - PREDICTED: protein FD [Populus euphratica]
16 Hb_179367_010 0.1492155228 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
17 Hb_057018_010 0.1495133297 - - hypothetical protein JCGZ_04004 [Jatropha curcas]
18 Hb_000352_020 0.1521999371 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
19 Hb_010080_040 0.1523116993 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009411_030 0.1533371842 - - PREDICTED: bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like [Malus domestica]

Gene co-expression network

sample Hb_081228_010 Hb_081228_010 Hb_001248_180 Hb_001248_180 Hb_081228_010--Hb_001248_180 Hb_004899_380 Hb_004899_380 Hb_081228_010--Hb_004899_380 Hb_000628_060 Hb_000628_060 Hb_081228_010--Hb_000628_060 Hb_004474_020 Hb_004474_020 Hb_081228_010--Hb_004474_020 Hb_048987_020 Hb_048987_020 Hb_081228_010--Hb_048987_020 Hb_001006_130 Hb_001006_130 Hb_081228_010--Hb_001006_130 Hb_009411_030 Hb_009411_030 Hb_001248_180--Hb_009411_030 Hb_001248_180--Hb_000628_060 Hb_008066_020 Hb_008066_020 Hb_001248_180--Hb_008066_020 Hb_001248_180--Hb_004474_020 Hb_010926_020 Hb_010926_020 Hb_001248_180--Hb_010926_020 Hb_004899_380--Hb_048987_020 Hb_004899_380--Hb_004474_020 Hb_000224_020 Hb_000224_020 Hb_004899_380--Hb_000224_020 Hb_001006_080 Hb_001006_080 Hb_004899_380--Hb_001006_080 Hb_000696_120 Hb_000696_120 Hb_004899_380--Hb_000696_120 Hb_034310_020 Hb_034310_020 Hb_004899_380--Hb_034310_020 Hb_003777_150 Hb_003777_150 Hb_000628_060--Hb_003777_150 Hb_000579_210 Hb_000579_210 Hb_000628_060--Hb_000579_210 Hb_000628_060--Hb_004474_020 Hb_084304_010 Hb_084304_010 Hb_000628_060--Hb_084304_010 Hb_004970_100 Hb_004970_100 Hb_000628_060--Hb_004970_100 Hb_004474_020--Hb_000224_020 Hb_004474_020--Hb_034310_020 Hb_004474_020--Hb_048987_020 Hb_004474_020--Hb_003777_150 Hb_008406_050 Hb_008406_050 Hb_004474_020--Hb_008406_050 Hb_087314_010 Hb_087314_010 Hb_048987_020--Hb_087314_010 Hb_048987_020--Hb_034310_020 Hb_003878_130 Hb_003878_130 Hb_048987_020--Hb_003878_130 Hb_180695_010 Hb_180695_010 Hb_048987_020--Hb_180695_010 Hb_166700_010 Hb_166700_010 Hb_001006_130--Hb_166700_010 Hb_151027_010 Hb_151027_010 Hb_001006_130--Hb_151027_010 Hb_000174_130 Hb_000174_130 Hb_001006_130--Hb_000174_130 Hb_104362_020 Hb_104362_020 Hb_001006_130--Hb_104362_020 Hb_000917_220 Hb_000917_220 Hb_001006_130--Hb_000917_220 Hb_174829_030 Hb_174829_030 Hb_001006_130--Hb_174829_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.88884 5.7751 22.9863 0 0.750476
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.444499 0

CAGE analysis