Hb_008066_020

Information

Type -
Description -
Location Contig8066: 9379-9742
Sequence    

Annotation

kegg
ID rcu:RCOM_0417990
description hypothetical protein
nr
ID XP_002532955.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T3Y6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0417990 PE=4 SV=1
Gene Ontology
ID GO:0006950
description senescence-associated gene

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59057: 9264-9785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008066_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001248_180 0.1329515585 - - -
3 Hb_004319_100 0.1421969607 - - PREDICTED: gibberellin-regulated protein 14 isoform X3 [Jatropha curcas]
4 Hb_033772_040 0.1464538107 - - conserved hypothetical protein [Ricinus communis]
5 Hb_034310_020 0.1488847386 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Jatropha curcas]
6 Hb_011609_200 0.1564866245 - - PREDICTED: ultraviolet-B receptor UVR8-like isoform X3 [Populus euphratica]
7 Hb_007426_100 0.1640433943 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000194_030 0.1666279883 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
9 Hb_008406_050 0.1717057486 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 2 [Jatropha curcas]
10 Hb_000220_020 0.1732662533 - - hypothetical protein CICLE_v10017575mg [Citrus clementina]
11 Hb_001529_010 0.1753544575 - - -
12 Hb_001428_010 0.1772418968 - - PREDICTED: transcription factor PRE1-like [Jatropha curcas]
13 Hb_039946_040 0.1775363042 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
14 Hb_004474_020 0.1789783689 - - aldo-keto reductase, putative [Ricinus communis]
15 Hb_081228_010 0.1800669765 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
16 Hb_002874_100 0.1810646555 - - cytochrome P450, putative [Ricinus communis]
17 Hb_002894_020 0.1858877494 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
18 Hb_000156_150 0.1859826164 - - hypothetical protein JCGZ_04603 [Jatropha curcas]
19 Hb_104362_010 0.1902659526 - - hypothetical protein POPTR_0247s002302g, partial [Populus trichocarpa]
20 Hb_000445_480 0.1935882115 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_008066_020 Hb_008066_020 Hb_001248_180 Hb_001248_180 Hb_008066_020--Hb_001248_180 Hb_004319_100 Hb_004319_100 Hb_008066_020--Hb_004319_100 Hb_033772_040 Hb_033772_040 Hb_008066_020--Hb_033772_040 Hb_034310_020 Hb_034310_020 Hb_008066_020--Hb_034310_020 Hb_011609_200 Hb_011609_200 Hb_008066_020--Hb_011609_200 Hb_007426_100 Hb_007426_100 Hb_008066_020--Hb_007426_100 Hb_081228_010 Hb_081228_010 Hb_001248_180--Hb_081228_010 Hb_009411_030 Hb_009411_030 Hb_001248_180--Hb_009411_030 Hb_000628_060 Hb_000628_060 Hb_001248_180--Hb_000628_060 Hb_004474_020 Hb_004474_020 Hb_001248_180--Hb_004474_020 Hb_010926_020 Hb_010926_020 Hb_001248_180--Hb_010926_020 Hb_000194_030 Hb_000194_030 Hb_004319_100--Hb_000194_030 Hb_004319_100--Hb_033772_040 Hb_004319_100--Hb_007426_100 Hb_001529_010 Hb_001529_010 Hb_004319_100--Hb_001529_010 Hb_004319_100--Hb_034310_020 Hb_159012_010 Hb_159012_010 Hb_004319_100--Hb_159012_010 Hb_033772_040--Hb_034310_020 Hb_033772_040--Hb_004474_020 Hb_033772_040--Hb_001529_010 Hb_033772_040--Hb_010926_020 Hb_004899_380 Hb_004899_380 Hb_033772_040--Hb_004899_380 Hb_034310_020--Hb_004474_020 Hb_034310_020--Hb_004899_380 Hb_008406_050 Hb_008406_050 Hb_034310_020--Hb_008406_050 Hb_048987_020 Hb_048987_020 Hb_034310_020--Hb_048987_020 Hb_160479_010 Hb_160479_010 Hb_011609_200--Hb_160479_010 Hb_033691_010 Hb_033691_010 Hb_011609_200--Hb_033691_010 Hb_010068_010 Hb_010068_010 Hb_011609_200--Hb_010068_010 Hb_000156_150 Hb_000156_150 Hb_011609_200--Hb_000156_150 Hb_000926_240 Hb_000926_240 Hb_011609_200--Hb_000926_240 Hb_104362_010 Hb_104362_010 Hb_011609_200--Hb_104362_010 Hb_002874_100 Hb_002874_100 Hb_007426_100--Hb_002874_100 Hb_033153_030 Hb_033153_030 Hb_007426_100--Hb_033153_030 Hb_007426_100--Hb_000194_030 Hb_000445_480 Hb_000445_480 Hb_007426_100--Hb_000445_480 Hb_007426_100--Hb_001529_010 Hb_002894_020 Hb_002894_020 Hb_007426_100--Hb_002894_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.259921 0.60816 4.29821 0 0.20941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.366787 0

CAGE analysis