Hb_002820_010

Information

Type -
Description -
Location Contig2820: 4025-8620
Sequence    

Annotation

kegg
ID pop:POPTR_0005s15770g
description POPTRDRAFT_209865; basal transcription factor complex subunit-related family protein
nr
ID XP_012078222.1
description PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
swissprot
ID P16900
description Gag polyprotein OS=Ovine maedi visna related virus (strain South Africa) GN=gag PE=3 SV=1
trembl
ID A0A067KLW9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12081 PE=4 SV=1
Gene Ontology
ID GO:0000439
description general transcription factor iih subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002820_010 0.0 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
2 Hb_000252_130 0.1238420367 - - hypothetical protein POPTR_0011s17240g, partial [Populus trichocarpa]
3 Hb_003642_050 0.1544518703 - - hypothetical protein CISIN_1g048193mg, partial [Citrus sinensis]
4 Hb_008931_010 0.1955216654 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
5 Hb_000723_190 0.1971173602 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
6 Hb_001846_070 0.1977241473 - - PREDICTED: fructokinase-1 [Jatropha curcas]
7 Hb_002374_120 0.2012610397 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Jatropha curcas]
8 Hb_000125_030 0.2029153638 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
9 Hb_001894_170 0.2060593435 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
10 Hb_004414_050 0.2064409524 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_029510_040 0.2116674897 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
12 Hb_001357_010 0.2175651686 - - -
13 Hb_000329_180 0.2182400745 - - Auxin-induced protein X10A, putative [Ricinus communis]
14 Hb_061802_010 0.2182836013 - - hypothetical protein VITISV_011986 [Vitis vinifera]
15 Hb_015057_060 0.220743925 - - -
16 Hb_002205_130 0.2209866375 - - hypothetical protein B456_008G176100 [Gossypium raimondii]
17 Hb_000147_040 0.2221867587 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
18 Hb_019654_090 0.2243415103 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
19 Hb_000189_140 0.2258598575 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000530_070 0.2280811797 - - neutral/alkaline invertase 3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_002820_010 Hb_002820_010 Hb_000252_130 Hb_000252_130 Hb_002820_010--Hb_000252_130 Hb_003642_050 Hb_003642_050 Hb_002820_010--Hb_003642_050 Hb_008931_010 Hb_008931_010 Hb_002820_010--Hb_008931_010 Hb_000723_190 Hb_000723_190 Hb_002820_010--Hb_000723_190 Hb_001846_070 Hb_001846_070 Hb_002820_010--Hb_001846_070 Hb_002374_120 Hb_002374_120 Hb_002820_010--Hb_002374_120 Hb_000252_130--Hb_000723_190 Hb_000252_130--Hb_003642_050 Hb_005224_010 Hb_005224_010 Hb_000252_130--Hb_005224_010 Hb_000116_420 Hb_000116_420 Hb_000252_130--Hb_000116_420 Hb_001894_170 Hb_001894_170 Hb_000252_130--Hb_001894_170 Hb_000125_030 Hb_000125_030 Hb_003642_050--Hb_000125_030 Hb_003581_260 Hb_003581_260 Hb_003642_050--Hb_003581_260 Hb_003504_020 Hb_003504_020 Hb_003642_050--Hb_003504_020 Hb_001159_080 Hb_001159_080 Hb_003642_050--Hb_001159_080 Hb_012799_100 Hb_012799_100 Hb_003642_050--Hb_012799_100 Hb_001096_110 Hb_001096_110 Hb_003642_050--Hb_001096_110 Hb_005539_240 Hb_005539_240 Hb_008931_010--Hb_005539_240 Hb_005505_020 Hb_005505_020 Hb_008931_010--Hb_005505_020 Hb_002759_240 Hb_002759_240 Hb_008931_010--Hb_002759_240 Hb_008931_010--Hb_001846_070 Hb_061802_010 Hb_061802_010 Hb_008931_010--Hb_061802_010 Hb_002182_090 Hb_002182_090 Hb_008931_010--Hb_002182_090 Hb_000723_190--Hb_001894_170 Hb_000723_190--Hb_002759_240 Hb_000723_190--Hb_002182_090 Hb_000723_190--Hb_005539_240 Hb_000432_050 Hb_000432_050 Hb_000723_190--Hb_000432_050 Hb_003581_220 Hb_003581_220 Hb_001846_070--Hb_003581_220 Hb_000530_070 Hb_000530_070 Hb_001846_070--Hb_000530_070 Hb_000264_020 Hb_000264_020 Hb_001846_070--Hb_000264_020 Hb_001846_070--Hb_002759_240 Hb_146225_010 Hb_146225_010 Hb_001846_070--Hb_146225_010 Hb_002182_030 Hb_002182_030 Hb_001846_070--Hb_002182_030 Hb_002374_120--Hb_003642_050 Hb_000029_310 Hb_000029_310 Hb_002374_120--Hb_000029_310 Hb_006787_050 Hb_006787_050 Hb_002374_120--Hb_006787_050 Hb_002374_120--Hb_000252_130 Hb_030370_030 Hb_030370_030 Hb_002374_120--Hb_030370_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68707 0.203535 0.176535 0.179142 0.0545612 0.242685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.931888 1.98956 2.65156 0.560112 0.863062

CAGE analysis