Hb_004032_020

Information

Type -
Description -
Location Contig4032: 10658-12665
Sequence    

Annotation

kegg
ID rcu:RCOM_0537190
description hypothetical protein
nr
ID EEC71896.1
description hypothetical protein OsI_04644 [Oryza sativa Indica Group]
swissprot
ID -
description -
trembl
ID B8A718
description Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_04644 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cobalt ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39973: 1381-12914
cDNA
(Sanger)
(ID:Location)		 007_K11.ab1: 1381-12840 , 046_A10.ab1: 1446-12878

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_020 0.0 - - hypothetical protein OsI_04644 [Oryza sativa Indica Group]
2 Hb_002454_030 0.0938310679 - - PREDICTED: mitochondrial substrate carrier family protein B [Jatropha curcas]
3 Hb_002232_440 0.1074221491 - - PREDICTED: uncharacterized protein LOC105130257 [Populus euphratica]
4 Hb_000608_370 0.1084319325 - - acyl-carrier-protein [Triadica sebifera]
5 Hb_001277_070 0.118712605 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
6 Hb_000025_230 0.1275725116 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]
7 Hb_007575_060 0.1339562442 - - hypothetical protein CARUB_v10002094mg, partial [Capsella rubella]
8 Hb_001832_060 0.1347481041 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
9 Hb_001047_230 0.1349946154 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_011224_110 0.1359575539 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
11 Hb_000155_200 0.136126095 - - Rab7 [Hevea brasiliensis]
12 Hb_000788_090 0.1361535604 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X2 [Glycine max]
13 Hb_000640_080 0.1368346092 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
14 Hb_001934_030 0.1368369978 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
15 Hb_003607_150 0.1373056186 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
16 Hb_129204_030 0.1373186591 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
17 Hb_000167_140 0.1376244083 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
18 Hb_047503_010 0.1379885407 - - PREDICTED: putative protein N-methyltransferase YNL024C [Jatropha curcas]
19 Hb_007416_030 0.1392280697 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
20 Hb_000230_380 0.1396528152 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004032_020 Hb_004032_020 Hb_002454_030 Hb_002454_030 Hb_004032_020--Hb_002454_030 Hb_002232_440 Hb_002232_440 Hb_004032_020--Hb_002232_440 Hb_000608_370 Hb_000608_370 Hb_004032_020--Hb_000608_370 Hb_001277_070 Hb_001277_070 Hb_004032_020--Hb_001277_070 Hb_000025_230 Hb_000025_230 Hb_004032_020--Hb_000025_230 Hb_007575_060 Hb_007575_060 Hb_004032_020--Hb_007575_060 Hb_002454_030--Hb_000608_370 Hb_029866_060 Hb_029866_060 Hb_002454_030--Hb_029866_060 Hb_001047_230 Hb_001047_230 Hb_002454_030--Hb_001047_230 Hb_003656_070 Hb_003656_070 Hb_002454_030--Hb_003656_070 Hb_000788_090 Hb_000788_090 Hb_002454_030--Hb_000788_090 Hb_129204_030 Hb_129204_030 Hb_002454_030--Hb_129204_030 Hb_002928_130 Hb_002928_130 Hb_002232_440--Hb_002928_130 Hb_007154_020 Hb_007154_020 Hb_002232_440--Hb_007154_020 Hb_001540_010 Hb_001540_010 Hb_002232_440--Hb_001540_010 Hb_001292_020 Hb_001292_020 Hb_002232_440--Hb_001292_020 Hb_010921_010 Hb_010921_010 Hb_002232_440--Hb_010921_010 Hb_000698_030 Hb_000698_030 Hb_002232_440--Hb_000698_030 Hb_000608_370--Hb_129204_030 Hb_007416_030 Hb_007416_030 Hb_000608_370--Hb_007416_030 Hb_000608_370--Hb_001047_230 Hb_000608_370--Hb_000788_090 Hb_000258_170 Hb_000258_170 Hb_000608_370--Hb_000258_170 Hb_012505_010 Hb_012505_010 Hb_001277_070--Hb_012505_010 Hb_001277_070--Hb_000608_370 Hb_011224_110 Hb_011224_110 Hb_001277_070--Hb_011224_110 Hb_001277_070--Hb_129204_030 Hb_003581_150 Hb_003581_150 Hb_001277_070--Hb_003581_150 Hb_153112_020 Hb_153112_020 Hb_001277_070--Hb_153112_020 Hb_001459_080 Hb_001459_080 Hb_000025_230--Hb_001459_080 Hb_003607_150 Hb_003607_150 Hb_000025_230--Hb_003607_150 Hb_008112_040 Hb_008112_040 Hb_000025_230--Hb_008112_040 Hb_168878_010 Hb_168878_010 Hb_000025_230--Hb_168878_010 Hb_002374_170 Hb_002374_170 Hb_000025_230--Hb_002374_170 Hb_011381_060 Hb_011381_060 Hb_000025_230--Hb_011381_060 Hb_000139_350 Hb_000139_350 Hb_007575_060--Hb_000139_350 Hb_003929_260 Hb_003929_260 Hb_007575_060--Hb_003929_260 Hb_135545_010 Hb_135545_010 Hb_007575_060--Hb_135545_010 Hb_002150_080 Hb_002150_080 Hb_007575_060--Hb_002150_080 Hb_007426_180 Hb_007426_180 Hb_007575_060--Hb_007426_180 Hb_017469_020 Hb_017469_020 Hb_007575_060--Hb_017469_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.25511 1.12156 1.95381 0.305482 1.63388 0.713953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.12894 4.06624 2.83795 0.652092 0.773693

CAGE analysis