Hb_001911_060

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1911: 103115-106202
Sequence    

Annotation

kegg
ID rcu:RCOM_0454760
description hypothetical protein
nr
ID XP_002529484.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8W4J9
description Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2
trembl
ID B9SU15
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0454760 PE=4 SV=1
Gene Ontology
ID GO:0016787
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001911_060 0.0 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
2 Hb_002289_090 0.1935540485 - - cytoplasmic tRNA 2-thiolation protein 2-like [Scleropages formosus]
3 Hb_002835_100 0.206257339 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
4 Hb_001114_050 0.2122112206 - - hypothetical protein RCOM_0744580 [Ricinus communis]
5 Hb_001222_050 0.2165189155 - - hypothetical protein CICLE_v100161911mg, partial [Citrus clementina]
6 Hb_002748_030 0.2310029493 - - nucleotide binding protein, putative [Ricinus communis]
7 Hb_000116_430 0.233364847 - - PREDICTED: mitochondrial phosphate carrier protein 1, mitochondrial-like isoform X1 [Jatropha curcas]
8 Hb_003294_100 0.239783423 - - hypothetical protein VITISV_009629 [Vitis vinifera]
9 Hb_004208_130 0.2414357475 - - hypothetical protein JCGZ_16532 [Jatropha curcas]
10 Hb_002609_060 0.2422450762 - - PREDICTED: sugar transport protein 8-like [Jatropha curcas]
11 Hb_082182_010 0.2447363102 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
12 Hb_000907_170 0.2473424813 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
13 Hb_001523_020 0.2477295308 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
14 Hb_000685_050 0.2493244349 - - PREDICTED: mitochondrial inner membrane protein OXA1-like [Populus euphratica]
15 Hb_011942_090 0.2499983165 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X1 [Jatropha curcas]
16 Hb_101808_010 0.2503129892 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
17 Hb_048476_050 0.2526304526 - - semialdehyde dehydrogenase family protein [Populus trichocarpa]
18 Hb_031718_010 0.2530128357 - - -
19 Hb_000563_190 0.2531220918 - - hypothetical protein PRUPE_ppa002828mg [Prunus persica]
20 Hb_014894_010 0.2547472185 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]

Gene co-expression network

sample Hb_001911_060 Hb_001911_060 Hb_002289_090 Hb_002289_090 Hb_001911_060--Hb_002289_090 Hb_002835_100 Hb_002835_100 Hb_001911_060--Hb_002835_100 Hb_001114_050 Hb_001114_050 Hb_001911_060--Hb_001114_050 Hb_001222_050 Hb_001222_050 Hb_001911_060--Hb_001222_050 Hb_002748_030 Hb_002748_030 Hb_001911_060--Hb_002748_030 Hb_000116_430 Hb_000116_430 Hb_001911_060--Hb_000116_430 Hb_000931_010 Hb_000931_010 Hb_002289_090--Hb_000931_010 Hb_001080_220 Hb_001080_220 Hb_002289_090--Hb_001080_220 Hb_012979_020 Hb_012979_020 Hb_002289_090--Hb_012979_020 Hb_132998_010 Hb_132998_010 Hb_002289_090--Hb_132998_010 Hb_000907_170 Hb_000907_170 Hb_002289_090--Hb_000907_170 Hb_181600_010 Hb_181600_010 Hb_002835_100--Hb_181600_010 Hb_012114_040 Hb_012114_040 Hb_002835_100--Hb_012114_040 Hb_001663_050 Hb_001663_050 Hb_002835_100--Hb_001663_050 Hb_032208_060 Hb_032208_060 Hb_002835_100--Hb_032208_060 Hb_001357_300 Hb_001357_300 Hb_002835_100--Hb_001357_300 Hb_001414_030 Hb_001414_030 Hb_002835_100--Hb_001414_030 Hb_004208_130 Hb_004208_130 Hb_001114_050--Hb_004208_130 Hb_080048_020 Hb_080048_020 Hb_001114_050--Hb_080048_020 Hb_000316_020 Hb_000316_020 Hb_001114_050--Hb_000316_020 Hb_009644_040 Hb_009644_040 Hb_001114_050--Hb_009644_040 Hb_082182_010 Hb_082182_010 Hb_001114_050--Hb_082182_010 Hb_005224_010 Hb_005224_010 Hb_001222_050--Hb_005224_010 Hb_011316_020 Hb_011316_020 Hb_001222_050--Hb_011316_020 Hb_000922_390 Hb_000922_390 Hb_001222_050--Hb_000922_390 Hb_000010_410 Hb_000010_410 Hb_001222_050--Hb_000010_410 Hb_003333_050 Hb_003333_050 Hb_001222_050--Hb_003333_050 Hb_000599_350 Hb_000599_350 Hb_001222_050--Hb_000599_350 Hb_142343_010 Hb_142343_010 Hb_002748_030--Hb_142343_010 Hb_002311_340 Hb_002311_340 Hb_002748_030--Hb_002311_340 Hb_001157_110 Hb_001157_110 Hb_002748_030--Hb_001157_110 Hb_000020_120 Hb_000020_120 Hb_002748_030--Hb_000020_120 Hb_163975_010 Hb_163975_010 Hb_002748_030--Hb_163975_010 Hb_000327_160 Hb_000327_160 Hb_002748_030--Hb_000327_160 Hb_029888_010 Hb_029888_010 Hb_000116_430--Hb_029888_010 Hb_042202_030 Hb_042202_030 Hb_000116_430--Hb_042202_030 Hb_000116_430--Hb_001414_030 Hb_000116_430--Hb_000020_120 Hb_001511_070 Hb_001511_070 Hb_000116_430--Hb_001511_070 Hb_000856_150 Hb_000856_150 Hb_000116_430--Hb_000856_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.108456 0.0418127 0.0452865 0.0813195 0.0789228 0.460985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.272682 0.786785 1.09382 1.37151 0.457474

CAGE analysis