Hb_002835_100

Information

Type -
Description -
Location Contig2835: 76745-81194
Sequence    

Annotation

kegg
ID pop:POPTR_0012s08840g
description POPTRDRAFT_570138; hypothetical protein
nr
ID XP_012079973.1
description PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
swissprot
ID Q5JME8
description Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Oryza sativa subsp. japonica GN=DI19-5 PE=2 SV=1
trembl
ID A0A067K7K3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11399 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29636: 76465-80803 , PASA_asmbl_29637: 76777-80776
cDNA
(Sanger)
(ID:Location)		 043_P24.ab1: 78430-80767

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_100 0.0 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
2 Hb_181600_010 0.1131565496 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
3 Hb_012114_040 0.1174662901 - - DNA binding protein, putative [Ricinus communis]
4 Hb_001663_050 0.1193734288 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
5 Hb_032208_060 0.1200069632 - - PREDICTED: constitutive photomorphogenesis protein 10 isoform X2 [Populus euphratica]
6 Hb_001357_300 0.1212236806 - - PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_001414_030 0.1222824959 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
8 Hb_011942_090 0.1243253697 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X1 [Jatropha curcas]
9 Hb_001484_010 0.1289647744 - - hypothetical protein POPTR_0005s07440g [Populus trichocarpa]
10 Hb_048476_050 0.1307669856 - - semialdehyde dehydrogenase family protein [Populus trichocarpa]
11 Hb_000599_350 0.1310109604 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
12 Hb_009113_070 0.1310581403 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
13 Hb_006420_100 0.1321938314 - - PREDICTED: protein bicaudal C homolog 1 [Jatropha curcas]
14 Hb_116898_010 0.1324906018 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
15 Hb_086639_030 0.1360255568 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
16 Hb_011534_030 0.1386499095 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
17 Hb_000398_040 0.1391867844 - - Auxin response factor, putative [Ricinus communis]
18 Hb_172932_010 0.1418780282 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000340_390 0.14211335 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
20 Hb_003783_030 0.1430225031 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]

Gene co-expression network

sample Hb_002835_100 Hb_002835_100 Hb_181600_010 Hb_181600_010 Hb_002835_100--Hb_181600_010 Hb_012114_040 Hb_012114_040 Hb_002835_100--Hb_012114_040 Hb_001663_050 Hb_001663_050 Hb_002835_100--Hb_001663_050 Hb_032208_060 Hb_032208_060 Hb_002835_100--Hb_032208_060 Hb_001357_300 Hb_001357_300 Hb_002835_100--Hb_001357_300 Hb_001414_030 Hb_001414_030 Hb_002835_100--Hb_001414_030 Hb_048476_050 Hb_048476_050 Hb_181600_010--Hb_048476_050 Hb_003097_210 Hb_003097_210 Hb_181600_010--Hb_003097_210 Hb_001545_080 Hb_001545_080 Hb_181600_010--Hb_001545_080 Hb_001688_020 Hb_001688_020 Hb_181600_010--Hb_001688_020 Hb_155764_010 Hb_155764_010 Hb_181600_010--Hb_155764_010 Hb_000260_810 Hb_000260_810 Hb_181600_010--Hb_000260_810 Hb_012114_040--Hb_001663_050 Hb_005568_120 Hb_005568_120 Hb_012114_040--Hb_005568_120 Hb_012114_040--Hb_155764_010 Hb_012114_040--Hb_032208_060 Hb_001519_050 Hb_001519_050 Hb_012114_040--Hb_001519_050 Hb_002061_040 Hb_002061_040 Hb_012114_040--Hb_002061_040 Hb_086639_030 Hb_086639_030 Hb_001663_050--Hb_086639_030 Hb_034406_030 Hb_034406_030 Hb_001663_050--Hb_034406_030 Hb_001663_050--Hb_032208_060 Hb_007416_320 Hb_007416_320 Hb_001663_050--Hb_007416_320 Hb_001663_050--Hb_005568_120 Hb_028515_010 Hb_028515_010 Hb_032208_060--Hb_028515_010 Hb_032208_060--Hb_005568_120 Hb_001481_140 Hb_001481_140 Hb_032208_060--Hb_001481_140 Hb_005883_100 Hb_005883_100 Hb_032208_060--Hb_005883_100 Hb_001507_040 Hb_001507_040 Hb_001357_300--Hb_001507_040 Hb_000483_260 Hb_000483_260 Hb_001357_300--Hb_000483_260 Hb_001357_300--Hb_001414_030 Hb_034380_020 Hb_034380_020 Hb_001357_300--Hb_034380_020 Hb_000676_150 Hb_000676_150 Hb_001357_300--Hb_000676_150 Hb_001726_020 Hb_001726_020 Hb_001357_300--Hb_001726_020 Hb_000329_760 Hb_000329_760 Hb_001414_030--Hb_000329_760 Hb_016522_010 Hb_016522_010 Hb_001414_030--Hb_016522_010 Hb_000982_080 Hb_000982_080 Hb_001414_030--Hb_000982_080 Hb_001414_030--Hb_034380_020 Hb_011942_090 Hb_011942_090 Hb_001414_030--Hb_011942_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7453 13.1268 10.4882 12.7041 15.4577 21.4782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.6687 56.2689 59.6744 61.1269 20.0408

CAGE analysis