Hb_092820_020

Information

Type -
Description -
Location Contig92820: 2934-7836
Sequence    

Annotation

kegg
ID rcu:RCOM_0740270
description ATP binding protein, putative
nr
ID XP_002525488.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SHL9
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0740270 PE=4 SV=1
Gene Ontology
ID GO:0016772
description scy1-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092820_020 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000286_090 0.233997735 transcription factor TF Family: B3 hypothetical protein JCGZ_00197 [Jatropha curcas]
3 Hb_001163_090 0.2380688709 - - hypothetical protein POPTR_0009s14920g [Populus trichocarpa]
4 Hb_132998_010 0.2439280352 - - hypothetical protein JCGZ_00197 [Jatropha curcas]
5 Hb_000753_190 0.2568675536 - - PREDICTED: D-aminoacyl-tRNA deacylase [Populus euphratica]
6 Hb_065866_010 0.2577009981 - - PREDICTED: hydroxyacyl-thioester dehydratase type 2, mitochondrial [Fragaria vesca subsp. vesca]
7 Hb_002896_080 0.2619258332 - - -
8 Hb_029580_010 0.2624756799 - - PREDICTED: uncharacterized protein LOC105633393 [Jatropha curcas]
9 Hb_006869_030 0.2641184694 - - ATP binding protein, putative [Ricinus communis]
10 Hb_060618_010 0.2670365714 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
11 Hb_148909_020 0.2717306952 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_001950_120 0.2729832158 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
13 Hb_004680_020 0.2787921216 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105789475 [Gossypium raimondii]
14 Hb_001047_160 0.2790238265 - - -
15 Hb_000483_250 0.279237231 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
16 Hb_010827_020 0.2825367317 - - 60S ribosomal protein L17B [Hevea brasiliensis]
17 Hb_000819_070 0.2827707791 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
18 Hb_001959_300 0.284245373 - - PREDICTED: 3-isopropylmalate dehydratase large subunit [Jatropha curcas]
19 Hb_001387_020 0.2865979693 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
20 Hb_007290_080 0.2892985834 - - hypothetical protein CISIN_1g047098mg [Citrus sinensis]

Gene co-expression network

sample Hb_092820_020 Hb_092820_020 Hb_000286_090 Hb_000286_090 Hb_092820_020--Hb_000286_090 Hb_001163_090 Hb_001163_090 Hb_092820_020--Hb_001163_090 Hb_132998_010 Hb_132998_010 Hb_092820_020--Hb_132998_010 Hb_000753_190 Hb_000753_190 Hb_092820_020--Hb_000753_190 Hb_065866_010 Hb_065866_010 Hb_092820_020--Hb_065866_010 Hb_002896_080 Hb_002896_080 Hb_092820_020--Hb_002896_080 Hb_000286_090--Hb_132998_010 Hb_021888_060 Hb_021888_060 Hb_000286_090--Hb_021888_060 Hb_000286_090--Hb_001163_090 Hb_002289_090 Hb_002289_090 Hb_000286_090--Hb_002289_090 Hb_080048_020 Hb_080048_020 Hb_000286_090--Hb_080048_020 Hb_003124_060 Hb_003124_060 Hb_001163_090--Hb_003124_060 Hb_001163_090--Hb_132998_010 Hb_000281_230 Hb_000281_230 Hb_001163_090--Hb_000281_230 Hb_115940_010 Hb_115940_010 Hb_001163_090--Hb_115940_010 Hb_006342_020 Hb_006342_020 Hb_001163_090--Hb_006342_020 Hb_004635_060 Hb_004635_060 Hb_001163_090--Hb_004635_060 Hb_132998_010--Hb_021888_060 Hb_000230_030 Hb_000230_030 Hb_132998_010--Hb_000230_030 Hb_132998_010--Hb_002289_090 Hb_001493_120 Hb_001493_120 Hb_132998_010--Hb_001493_120 Hb_023711_010 Hb_023711_010 Hb_000753_190--Hb_023711_010 Hb_003638_070 Hb_003638_070 Hb_000753_190--Hb_003638_070 Hb_007290_080 Hb_007290_080 Hb_000753_190--Hb_007290_080 Hb_000010_260 Hb_000010_260 Hb_000753_190--Hb_000010_260 Hb_000329_020 Hb_000329_020 Hb_000753_190--Hb_000329_020 Hb_001387_020 Hb_001387_020 Hb_000753_190--Hb_001387_020 Hb_065866_010--Hb_007290_080 Hb_148909_020 Hb_148909_020 Hb_065866_010--Hb_148909_020 Hb_133702_040 Hb_133702_040 Hb_065866_010--Hb_133702_040 Hb_000836_140 Hb_000836_140 Hb_065866_010--Hb_000836_140 Hb_000434_020 Hb_000434_020 Hb_065866_010--Hb_000434_020 Hb_060618_010 Hb_060618_010 Hb_065866_010--Hb_060618_010 Hb_154826_010 Hb_154826_010 Hb_002896_080--Hb_154826_010 Hb_001019_040 Hb_001019_040 Hb_002896_080--Hb_001019_040 Hb_005625_060 Hb_005625_060 Hb_002896_080--Hb_005625_060 Hb_000580_080 Hb_000580_080 Hb_002896_080--Hb_000580_080 Hb_005701_020 Hb_005701_020 Hb_002896_080--Hb_005701_020 Hb_004800_070 Hb_004800_070 Hb_002896_080--Hb_004800_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0775469 0.0347979 0 0 1.07116 0.538394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.29603 3.11215 0.333773 1.69563 0.740022

CAGE analysis