Hb_002835_180

Information

Type -
Description -
Location Contig2835: 128060-139903
Sequence    

Annotation

kegg
ID tcc:TCM_035772
description DNA/RNA polymerases superfamily protein
nr
ID XP_007019629.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FQP6
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_035774 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_180 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_065525_090 0.096760262 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
3 Hb_002878_020 0.0984744842 - - mitochondrial carrier protein, putative [Ricinus communis]
4 Hb_034406_030 0.1059676002 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
5 Hb_012107_060 0.1130235072 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
6 Hb_011214_020 0.1147158256 - - PREDICTED: RNA-binding protein 5 isoform X1 [Jatropha curcas]
7 Hb_000258_260 0.1174913434 - - PREDICTED: protein HGH1 homolog [Jatropha curcas]
8 Hb_001287_030 0.119586243 - - 30S ribosomal protein S31, mitochondrial precursor, putative [Ricinus communis]
9 Hb_000069_420 0.1195863424 - - Beclin-1, putative [Ricinus communis]
10 Hb_008221_140 0.120593265 - - PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
11 Hb_001663_050 0.1215377806 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
12 Hb_000732_130 0.1221877379 transcription factor TF Family: HSF hypothetical protein JCGZ_17108 [Jatropha curcas]
13 Hb_000465_230 0.1256407725 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
14 Hb_000529_170 0.1256816508 - - hypothetical protein JCGZ_14691 [Jatropha curcas]
15 Hb_001021_130 0.1266434254 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
16 Hb_000007_140 0.1280048504 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Jatropha curcas]
17 Hb_005463_040 0.1293826249 - - signal transducer, putative [Ricinus communis]
18 Hb_011173_050 0.1296378508 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
19 Hb_012114_040 0.130320363 - - DNA binding protein, putative [Ricinus communis]
20 Hb_004994_140 0.1303234355 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002835_180 Hb_002835_180 Hb_065525_090 Hb_065525_090 Hb_002835_180--Hb_065525_090 Hb_002878_020 Hb_002878_020 Hb_002835_180--Hb_002878_020 Hb_034406_030 Hb_034406_030 Hb_002835_180--Hb_034406_030 Hb_012107_060 Hb_012107_060 Hb_002835_180--Hb_012107_060 Hb_011214_020 Hb_011214_020 Hb_002835_180--Hb_011214_020 Hb_000258_260 Hb_000258_260 Hb_002835_180--Hb_000258_260 Hb_002660_070 Hb_002660_070 Hb_065525_090--Hb_002660_070 Hb_065525_090--Hb_034406_030 Hb_001545_160 Hb_001545_160 Hb_065525_090--Hb_001545_160 Hb_020805_130 Hb_020805_130 Hb_065525_090--Hb_020805_130 Hb_000120_960 Hb_000120_960 Hb_065525_090--Hb_000120_960 Hb_000250_060 Hb_000250_060 Hb_002878_020--Hb_000250_060 Hb_009803_050 Hb_009803_050 Hb_002878_020--Hb_009803_050 Hb_002878_020--Hb_011214_020 Hb_086639_030 Hb_086639_030 Hb_002878_020--Hb_086639_030 Hb_001959_190 Hb_001959_190 Hb_002878_020--Hb_001959_190 Hb_001633_210 Hb_001633_210 Hb_002878_020--Hb_001633_210 Hb_000069_420 Hb_000069_420 Hb_034406_030--Hb_000069_420 Hb_001663_050 Hb_001663_050 Hb_034406_030--Hb_001663_050 Hb_003994_260 Hb_003994_260 Hb_034406_030--Hb_003994_260 Hb_001902_140 Hb_001902_140 Hb_034406_030--Hb_001902_140 Hb_003787_010 Hb_003787_010 Hb_034406_030--Hb_003787_010 Hb_007416_320 Hb_007416_320 Hb_034406_030--Hb_007416_320 Hb_004324_090 Hb_004324_090 Hb_012107_060--Hb_004324_090 Hb_012107_060--Hb_000069_420 Hb_004994_140 Hb_004994_140 Hb_012107_060--Hb_004994_140 Hb_158445_010 Hb_158445_010 Hb_012107_060--Hb_158445_010 Hb_012107_060--Hb_002878_020 Hb_012107_060--Hb_000250_060 Hb_000732_130 Hb_000732_130 Hb_011214_020--Hb_000732_130 Hb_011214_020--Hb_007416_320 Hb_001545_170 Hb_001545_170 Hb_011214_020--Hb_001545_170 Hb_011173_050 Hb_011173_050 Hb_011214_020--Hb_011173_050 Hb_005463_040 Hb_005463_040 Hb_011214_020--Hb_005463_040 Hb_000258_260--Hb_003994_260 Hb_001195_200 Hb_001195_200 Hb_000258_260--Hb_001195_200 Hb_012490_070 Hb_012490_070 Hb_000258_260--Hb_012490_070 Hb_000258_260--Hb_000069_420 Hb_000982_080 Hb_000982_080 Hb_000258_260--Hb_000982_080 Hb_000258_260--Hb_034406_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.2308 0.259316 0.103516 0.0875552 0.121 0.0875152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.306439 0.465012 0.392203 0.253456 0.182134

CAGE analysis