Hb_004545_050

Information

Type -
Description -
Location Contig4545: 53349-54666
Sequence    

Annotation

kegg
ID pop:POPTR_0005s04590g
description Cu/Zn superoxide dismutase family protein
nr
ID AAO14117.1
description Cu/Zn superoxide dismutase [Hevea brasiliensis]
swissprot
ID Q7M1R5
description Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1
trembl
ID Q8GZP2
description Superoxide dismutase [Cu-Zn] OS=Hevea brasiliensis GN=Cu/Zn-SOD PE=2 SV=1
Gene Ontology
ID GO:0004784
description superoxide dismutase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43375: 52168-52469 , PASA_asmbl_43376: 53404-54756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004545_050 0.0 - - Cu/Zn superoxide dismutase [Hevea brasiliensis]
2 Hb_000056_120 0.1738144114 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
3 Hb_000441_230 0.1791401703 - - unnamed protein product [Coffea canephora]
4 Hb_002506_110 0.1822989717 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
5 Hb_001017_100 0.1838088583 - - PREDICTED: uncharacterized protein LOC105644705 [Jatropha curcas]
6 Hb_011525_020 0.1910839045 - - PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas]
7 Hb_000252_090 0.1942861936 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
8 Hb_000376_150 0.2027254009 - - O-acyltransferase WSD1 [Gossypium arboreum]
9 Hb_000329_540 0.2058731276 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
10 Hb_003360_020 0.20965853 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
11 Hb_000156_030 0.2099262669 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005271_030 0.2135251865 - - copper-transporting atpase p-type, putative [Ricinus communis]
13 Hb_003540_140 0.2217973115 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
14 Hb_005590_030 0.2218667945 - - PREDICTED: (S)-coclaurine N-methyltransferase [Jatropha curcas]
15 Hb_001195_580 0.2241740903 - - hypothetical protein POPTR_0014s04130g [Populus trichocarpa]
16 Hb_000565_020 0.2249043504 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
17 Hb_000454_030 0.2274985479 - - -
18 Hb_000329_420 0.2295535924 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
19 Hb_000566_140 0.2298577079 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
20 Hb_003687_200 0.2304444991 - - PREDICTED: uncharacterized protein LOC105632139 [Jatropha curcas]

Gene co-expression network

sample Hb_004545_050 Hb_004545_050 Hb_000056_120 Hb_000056_120 Hb_004545_050--Hb_000056_120 Hb_000441_230 Hb_000441_230 Hb_004545_050--Hb_000441_230 Hb_002506_110 Hb_002506_110 Hb_004545_050--Hb_002506_110 Hb_001017_100 Hb_001017_100 Hb_004545_050--Hb_001017_100 Hb_011525_020 Hb_011525_020 Hb_004545_050--Hb_011525_020 Hb_000252_090 Hb_000252_090 Hb_004545_050--Hb_000252_090 Hb_000365_350 Hb_000365_350 Hb_000056_120--Hb_000365_350 Hb_000565_020 Hb_000565_020 Hb_000056_120--Hb_000565_020 Hb_000156_030 Hb_000156_030 Hb_000056_120--Hb_000156_030 Hb_061256_030 Hb_061256_030 Hb_000056_120--Hb_061256_030 Hb_001825_010 Hb_001825_010 Hb_000056_120--Hb_001825_010 Hb_000566_140 Hb_000566_140 Hb_000056_120--Hb_000566_140 Hb_000329_540 Hb_000329_540 Hb_000441_230--Hb_000329_540 Hb_003540_140 Hb_003540_140 Hb_000441_230--Hb_003540_140 Hb_000441_230--Hb_002506_110 Hb_003226_170 Hb_003226_170 Hb_000441_230--Hb_003226_170 Hb_005271_030 Hb_005271_030 Hb_000441_230--Hb_005271_030 Hb_000580_060 Hb_000580_060 Hb_000441_230--Hb_000580_060 Hb_000376_150 Hb_000376_150 Hb_002506_110--Hb_000376_150 Hb_009193_130 Hb_009193_130 Hb_002506_110--Hb_009193_130 Hb_098315_100 Hb_098315_100 Hb_002506_110--Hb_098315_100 Hb_002506_110--Hb_005271_030 Hb_000856_100 Hb_000856_100 Hb_002506_110--Hb_000856_100 Hb_007158_030 Hb_007158_030 Hb_002506_110--Hb_007158_030 Hb_001017_100--Hb_005271_030 Hb_001146_070 Hb_001146_070 Hb_001017_100--Hb_001146_070 Hb_001017_100--Hb_002506_110 Hb_000161_100 Hb_000161_100 Hb_001017_100--Hb_000161_100 Hb_000018_160 Hb_000018_160 Hb_001017_100--Hb_000018_160 Hb_001017_100--Hb_000441_230 Hb_003376_170 Hb_003376_170 Hb_011525_020--Hb_003376_170 Hb_005217_020 Hb_005217_020 Hb_011525_020--Hb_005217_020 Hb_001675_060 Hb_001675_060 Hb_011525_020--Hb_001675_060 Hb_011525_020--Hb_000441_230 Hb_003360_020 Hb_003360_020 Hb_011525_020--Hb_003360_020 Hb_001138_010 Hb_001138_010 Hb_000252_090--Hb_001138_010 Hb_001916_120 Hb_001916_120 Hb_000252_090--Hb_001916_120 Hb_000252_090--Hb_000329_540 Hb_000329_420 Hb_000329_420 Hb_000252_090--Hb_000329_420 Hb_000252_090--Hb_000156_030 Hb_000252_090--Hb_000441_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
905.258 13.1282 11.4736 280.402 867.006 811.587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
356.971 49.744 14.0544 3.12762 9.65468

CAGE analysis