Hb_089971_010

Information

Type -
Description -
Location Contig89971: 1335-1574
Sequence    

Annotation

kegg
ID csv:101229360
description (S)-coclaurine N-methyltransferase-like
nr
ID XP_004141332.1
description PREDICTED: (S)-coclaurine N-methyltransferase [Cucumis sativus]
swissprot
ID -
description -
trembl
ID A0A0A0L426
description Uncharacterized protein OS=Cucumis sativus GN=Csa_4G646310 PE=4 SV=1
Gene Ontology
ID GO:0008168
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089971_010 0.0 - - PREDICTED: (S)-coclaurine N-methyltransferase [Cucumis sativus]
2 Hb_070385_010 0.209129132 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
3 Hb_101020_010 0.232185445 - - -
4 Hb_000252_090 0.2344065684 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
5 Hb_134956_010 0.2384091568 - - PREDICTED: (S)-coclaurine N-methyltransferase [Jatropha curcas]
6 Hb_000329_420 0.2454749027 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
7 Hb_000215_260 0.2491436957 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
8 Hb_006960_030 0.2616375121 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44-like [Jatropha curcas]
9 Hb_003297_020 0.2618552863 - - unknown [Populus trichocarpa x Populus deltoides]
10 Hb_088428_010 0.2630247183 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
11 Hb_128496_010 0.2647876943 - - unnamed protein product [Vitis vinifera]
12 Hb_000979_010 0.2678590056 - - PREDICTED: uncharacterized protein LOC105128288 [Populus euphratica]
13 Hb_004324_240 0.2694469109 - - tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]
14 Hb_002235_130 0.2742818283 - - conserved hypothetical protein [Ricinus communis]
15 Hb_142751_010 0.2744049923 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009693_030 0.2751002305 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_012867_010 0.2761494477 - - Vacuolar protein sorting 45 [Theobroma cacao]
18 Hb_007136_020 0.277409933 - - PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic [Populus euphratica]
19 Hb_005618_060 0.2784679094 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
20 Hb_001916_120 0.2809274747 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]

Gene co-expression network

sample Hb_089971_010 Hb_089971_010 Hb_070385_010 Hb_070385_010 Hb_089971_010--Hb_070385_010 Hb_101020_010 Hb_101020_010 Hb_089971_010--Hb_101020_010 Hb_000252_090 Hb_000252_090 Hb_089971_010--Hb_000252_090 Hb_134956_010 Hb_134956_010 Hb_089971_010--Hb_134956_010 Hb_000329_420 Hb_000329_420 Hb_089971_010--Hb_000329_420 Hb_000215_260 Hb_000215_260 Hb_089971_010--Hb_000215_260 Hb_003297_020 Hb_003297_020 Hb_070385_010--Hb_003297_020 Hb_002249_110 Hb_002249_110 Hb_070385_010--Hb_002249_110 Hb_130134_030 Hb_130134_030 Hb_070385_010--Hb_130134_030 Hb_070385_010--Hb_134956_010 Hb_088428_010 Hb_088428_010 Hb_070385_010--Hb_088428_010 Hb_130134_020 Hb_130134_020 Hb_070385_010--Hb_130134_020 Hb_009693_030 Hb_009693_030 Hb_101020_010--Hb_009693_030 Hb_001916_060 Hb_001916_060 Hb_101020_010--Hb_001916_060 Hb_000160_150 Hb_000160_150 Hb_101020_010--Hb_000160_150 Hb_007136_020 Hb_007136_020 Hb_101020_010--Hb_007136_020 Hb_101020_010--Hb_003297_020 Hb_124961_010 Hb_124961_010 Hb_101020_010--Hb_124961_010 Hb_001138_010 Hb_001138_010 Hb_000252_090--Hb_001138_010 Hb_001916_120 Hb_001916_120 Hb_000252_090--Hb_001916_120 Hb_000329_540 Hb_000329_540 Hb_000252_090--Hb_000329_540 Hb_000252_090--Hb_000329_420 Hb_000156_030 Hb_000156_030 Hb_000252_090--Hb_000156_030 Hb_000441_230 Hb_000441_230 Hb_000252_090--Hb_000441_230 Hb_134956_010--Hb_003297_020 Hb_134956_010--Hb_002249_110 Hb_134956_010--Hb_088428_010 Hb_077211_010 Hb_077211_010 Hb_134956_010--Hb_077211_010 Hb_000329_420--Hb_000215_260 Hb_000329_420--Hb_001916_120 Hb_000056_120 Hb_000056_120 Hb_000329_420--Hb_000056_120 Hb_000056_230 Hb_000056_230 Hb_000329_420--Hb_000056_230 Hb_002265_030 Hb_002265_030 Hb_000329_420--Hb_002265_030 Hb_023327_030 Hb_023327_030 Hb_000215_260--Hb_023327_030 Hb_000497_230 Hb_000497_230 Hb_000215_260--Hb_000497_230 Hb_004324_240 Hb_004324_240 Hb_000215_260--Hb_004324_240 Hb_063716_010 Hb_063716_010 Hb_000215_260--Hb_063716_010 Hb_015026_060 Hb_015026_060 Hb_000215_260--Hb_015026_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.4986 0 9.20011 17.0701 19.9745 32.9764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14674 3.41558 0 0 0.74971

CAGE analysis