Hb_000007_070

Information

Type -
Description -
Location Contig7: 84871-90000
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11290g
description POPTRDRAFT_564464; hypothetical protein
nr
ID XP_002312368.1
description hypothetical protein POPTR_0008s11290g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HIW4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s11290g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_070 0.0 - - hypothetical protein POPTR_0008s11290g [Populus trichocarpa]
2 Hb_003811_050 0.0919469697 - - hypothetical protein JCGZ_01310 [Jatropha curcas]
3 Hb_081191_010 0.1388068599 - - PREDICTED: pathogenesis-related protein PR-1-like [Jatropha curcas]
4 Hb_000975_130 0.1411311118 - - PREDICTED: uncharacterized protein LOC104445138 [Eucalyptus grandis]
5 Hb_001404_060 0.1426658495 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_000320_240 0.1431741831 - - multicopper oxidase, putative [Ricinus communis]
7 Hb_006103_050 0.1445986421 - - -
8 Hb_073870_010 0.1453916948 - - hypothetical protein RCOM_0725510 [Ricinus communis]
9 Hb_002580_020 0.1486190439 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
10 Hb_004330_050 0.1495285772 - - conserved hypothetical protein [Ricinus communis]
11 Hb_110631_010 0.1498094796 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
12 Hb_010308_010 0.1515079133 - - hypothetical protein JCGZ_22818 [Jatropha curcas]
13 Hb_000496_080 0.1518977172 - - Proteinase inhibitor, putative [Ricinus communis]
14 Hb_004319_100 0.1543876578 - - PREDICTED: gibberellin-regulated protein 14 isoform X3 [Jatropha curcas]
15 Hb_001300_060 0.1576872272 - - PREDICTED: monothiol glutaredoxin-S6-like [Jatropha curcas]
16 Hb_020112_010 0.1582550721 - - acyltransferase, putative [Ricinus communis]
17 Hb_002601_040 0.1587449948 - - hypothetical protein JCGZ_06197 [Jatropha curcas]
18 Hb_059226_020 0.1599385509 - - hypothetical protein B456_008G287700 [Gossypium raimondii]
19 Hb_000853_010 0.1605512094 - - Pectinesterase-3 precursor, putative [Ricinus communis]
20 Hb_005672_030 0.1606114144 - - PREDICTED: high mobility group B protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000007_070 Hb_000007_070 Hb_003811_050 Hb_003811_050 Hb_000007_070--Hb_003811_050 Hb_081191_010 Hb_081191_010 Hb_000007_070--Hb_081191_010 Hb_000975_130 Hb_000975_130 Hb_000007_070--Hb_000975_130 Hb_001404_060 Hb_001404_060 Hb_000007_070--Hb_001404_060 Hb_000320_240 Hb_000320_240 Hb_000007_070--Hb_000320_240 Hb_006103_050 Hb_006103_050 Hb_000007_070--Hb_006103_050 Hb_003811_050--Hb_000975_130 Hb_003811_050--Hb_081191_010 Hb_002580_020 Hb_002580_020 Hb_003811_050--Hb_002580_020 Hb_000956_060 Hb_000956_060 Hb_003811_050--Hb_000956_060 Hb_000676_130 Hb_000676_130 Hb_003811_050--Hb_000676_130 Hb_081191_010--Hb_002580_020 Hb_009615_030 Hb_009615_030 Hb_081191_010--Hb_009615_030 Hb_000429_030 Hb_000429_030 Hb_081191_010--Hb_000429_030 Hb_003177_100 Hb_003177_100 Hb_081191_010--Hb_003177_100 Hb_002413_030 Hb_002413_030 Hb_081191_010--Hb_002413_030 Hb_000975_130--Hb_000956_060 Hb_005672_030 Hb_005672_030 Hb_000975_130--Hb_005672_030 Hb_000853_010 Hb_000853_010 Hb_000975_130--Hb_000853_010 Hb_000975_130--Hb_000676_130 Hb_004631_030 Hb_004631_030 Hb_000975_130--Hb_004631_030 Hb_073870_010 Hb_073870_010 Hb_001404_060--Hb_073870_010 Hb_001404_060--Hb_006103_050 Hb_007138_010 Hb_007138_010 Hb_001404_060--Hb_007138_010 Hb_100953_010 Hb_100953_010 Hb_001404_060--Hb_100953_010 Hb_005551_070 Hb_005551_070 Hb_001404_060--Hb_005551_070 Hb_004330_050 Hb_004330_050 Hb_001404_060--Hb_004330_050 Hb_110631_010 Hb_110631_010 Hb_000320_240--Hb_110631_010 Hb_000320_240--Hb_007138_010 Hb_165110_010 Hb_165110_010 Hb_000320_240--Hb_165110_010 Hb_000086_510 Hb_000086_510 Hb_000320_240--Hb_000086_510 Hb_000320_240--Hb_073870_010 Hb_000320_240--Hb_100953_010 Hb_006103_050--Hb_073870_010 Hb_006103_050--Hb_005551_070 Hb_006103_050--Hb_007138_010 Hb_006103_050--Hb_004330_050 Hb_010308_010 Hb_010308_010 Hb_006103_050--Hb_010308_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0252301 0.0952371 0.422155 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.127758 0

CAGE analysis