Hb_008948_060

Information

Type -
Description -
Location Contig8948: 78258-79157
Sequence    

Annotation

kegg
ID rcu:RCOM_0224230
description hypothetical protein
nr
ID XP_002524503.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SET4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0224230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61723: 78065-78993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008948_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000359_320 0.1328662114 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
3 Hb_001454_360 0.1573116413 - - PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]
4 Hb_073171_010 0.1592122642 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
5 Hb_002236_070 0.1639794254 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
6 Hb_006020_010 0.1640906659 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
7 Hb_001862_170 0.1656212601 - - zinc finger protein, putative [Ricinus communis]
8 Hb_001558_070 0.1702186723 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
9 Hb_000429_110 0.1742207626 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
10 Hb_004635_040 0.179931355 - - Polyprotein, putative [Solanum demissum]
11 Hb_000152_250 0.1842840791 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
12 Hb_002028_160 0.1843426775 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Populus euphratica]
13 Hb_001318_290 0.1857628854 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
14 Hb_052764_080 0.1861588384 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
15 Hb_001006_030 0.1861817774 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010614_020 0.1870058467 - - BnaC05g27570D [Brassica napus]
17 Hb_000069_520 0.1875578937 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
18 Hb_001227_020 0.188902028 - - -
19 Hb_000907_120 0.1910138846 transcription factor TF Family: G2-like PREDICTED: transcription repressor KAN1-like [Populus euphratica]
20 Hb_000586_100 0.1920423515 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008948_060 Hb_008948_060 Hb_000359_320 Hb_000359_320 Hb_008948_060--Hb_000359_320 Hb_001454_360 Hb_001454_360 Hb_008948_060--Hb_001454_360 Hb_073171_010 Hb_073171_010 Hb_008948_060--Hb_073171_010 Hb_002236_070 Hb_002236_070 Hb_008948_060--Hb_002236_070 Hb_006020_010 Hb_006020_010 Hb_008948_060--Hb_006020_010 Hb_001862_170 Hb_001862_170 Hb_008948_060--Hb_001862_170 Hb_001318_290 Hb_001318_290 Hb_000359_320--Hb_001318_290 Hb_001227_020 Hb_001227_020 Hb_000359_320--Hb_001227_020 Hb_000359_320--Hb_002236_070 Hb_003938_010 Hb_003938_010 Hb_000359_320--Hb_003938_010 Hb_008695_130 Hb_008695_130 Hb_000359_320--Hb_008695_130 Hb_001558_070 Hb_001558_070 Hb_001454_360--Hb_001558_070 Hb_000000_280 Hb_000000_280 Hb_001454_360--Hb_000000_280 Hb_007403_010 Hb_007403_010 Hb_001454_360--Hb_007403_010 Hb_001454_360--Hb_073171_010 Hb_017661_020 Hb_017661_020 Hb_001454_360--Hb_017661_020 Hb_001259_100 Hb_001259_100 Hb_073171_010--Hb_001259_100 Hb_052764_080 Hb_052764_080 Hb_073171_010--Hb_052764_080 Hb_000152_250 Hb_000152_250 Hb_073171_010--Hb_000152_250 Hb_015473_010 Hb_015473_010 Hb_073171_010--Hb_015473_010 Hb_005183_200 Hb_005183_200 Hb_073171_010--Hb_005183_200 Hb_001823_070 Hb_001823_070 Hb_073171_010--Hb_001823_070 Hb_000407_080 Hb_000407_080 Hb_002236_070--Hb_000407_080 Hb_002236_070--Hb_006020_010 Hb_004635_040 Hb_004635_040 Hb_002236_070--Hb_004635_040 Hb_004452_080 Hb_004452_080 Hb_002236_070--Hb_004452_080 Hb_001922_020 Hb_001922_020 Hb_002236_070--Hb_001922_020 Hb_013914_020 Hb_013914_020 Hb_002236_070--Hb_013914_020 Hb_000586_100 Hb_000586_100 Hb_006020_010--Hb_000586_100 Hb_000907_120 Hb_000907_120 Hb_006020_010--Hb_000907_120 Hb_003439_090 Hb_003439_090 Hb_006020_010--Hb_003439_090 Hb_006020_010--Hb_000407_080 Hb_006020_010--Hb_000152_250 Hb_006364_020 Hb_006364_020 Hb_006020_010--Hb_006364_020 Hb_001862_170--Hb_001558_070 Hb_001862_170--Hb_073171_010 Hb_001006_030 Hb_001006_030 Hb_001862_170--Hb_001006_030 Hb_001493_170 Hb_001493_170 Hb_001862_170--Hb_001493_170 Hb_002461_070 Hb_002461_070 Hb_001862_170--Hb_002461_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0734393 32.3797 7.36301 28.4072 0.0305001 0.057587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.524611 4.24239 0.105775 24.899 0.938422

CAGE analysis