Hb_000000_280

Information

Type -
Description -
Location Contig0: 491394-492305
Sequence    

Annotation

kegg
ID rcu:RCOM_1593570
description hypothetical protein
nr
ID XP_002510338.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SYY4
description Elongation of fatty acids protein 3-like OS=Arabidopsis thaliana GN=HOS3 PE=2 SV=1
trembl
ID B9R7P5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1593570 PE=4 SV=1
Gene Ontology
ID GO:0016021
description elongation of fatty acids protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_280 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005396_110 0.1525971978 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000509_040 0.1564859348 - - hypothetical protein VITISV_009716 [Vitis vinifera]
4 Hb_003800_010 0.164014664 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
5 Hb_132517_010 0.1694399523 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
6 Hb_001454_360 0.171065665 - - PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]
7 Hb_000661_010 0.1757828315 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
8 Hb_005389_090 0.1761757703 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
9 Hb_001897_030 0.1795826087 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
10 Hb_001059_050 0.1796608299 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
11 Hb_024357_010 0.1825084182 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
12 Hb_000111_150 0.1829816603 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
13 Hb_008725_190 0.1855173301 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
14 Hb_002049_030 0.1889086048 - - PREDICTED: uncharacterized protein LOC105635940 isoform X3 [Jatropha curcas]
15 Hb_022206_030 0.1926183877 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
16 Hb_000991_110 0.1941777939 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
17 Hb_151616_010 0.1953365426 - - -
18 Hb_087468_010 0.1960030672 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
19 Hb_005605_030 0.1961556352 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
20 Hb_006573_060 0.1977669939 - - hypothetical protein [Bruguiera gymnorhiza]

Gene co-expression network

sample Hb_000000_280 Hb_000000_280 Hb_005396_110 Hb_005396_110 Hb_000000_280--Hb_005396_110 Hb_000509_040 Hb_000509_040 Hb_000000_280--Hb_000509_040 Hb_003800_010 Hb_003800_010 Hb_000000_280--Hb_003800_010 Hb_132517_010 Hb_132517_010 Hb_000000_280--Hb_132517_010 Hb_001454_360 Hb_001454_360 Hb_000000_280--Hb_001454_360 Hb_000661_010 Hb_000661_010 Hb_000000_280--Hb_000661_010 Hb_005396_110--Hb_000509_040 Hb_005396_110--Hb_132517_010 Hb_000111_150 Hb_000111_150 Hb_005396_110--Hb_000111_150 Hb_001059_050 Hb_001059_050 Hb_005396_110--Hb_001059_050 Hb_001897_030 Hb_001897_030 Hb_005396_110--Hb_001897_030 Hb_087468_010 Hb_087468_010 Hb_005396_110--Hb_087468_010 Hb_005605_030 Hb_005605_030 Hb_000509_040--Hb_005605_030 Hb_000509_040--Hb_001897_030 Hb_000509_040--Hb_000111_150 Hb_002049_030 Hb_002049_030 Hb_000509_040--Hb_002049_030 Hb_000509_040--Hb_132517_010 Hb_000252_190 Hb_000252_190 Hb_003800_010--Hb_000252_190 Hb_004143_050 Hb_004143_050 Hb_003800_010--Hb_004143_050 Hb_003800_010--Hb_087468_010 Hb_000417_230 Hb_000417_230 Hb_003800_010--Hb_000417_230 Hb_052113_020 Hb_052113_020 Hb_003800_010--Hb_052113_020 Hb_005687_060 Hb_005687_060 Hb_003800_010--Hb_005687_060 Hb_005389_090 Hb_005389_090 Hb_132517_010--Hb_005389_090 Hb_132517_010--Hb_001059_050 Hb_132517_010--Hb_001897_030 Hb_151616_010 Hb_151616_010 Hb_132517_010--Hb_151616_010 Hb_001227_010 Hb_001227_010 Hb_132517_010--Hb_001227_010 Hb_008948_060 Hb_008948_060 Hb_001454_360--Hb_008948_060 Hb_001558_070 Hb_001558_070 Hb_001454_360--Hb_001558_070 Hb_007403_010 Hb_007403_010 Hb_001454_360--Hb_007403_010 Hb_073171_010 Hb_073171_010 Hb_001454_360--Hb_073171_010 Hb_017661_020 Hb_017661_020 Hb_001454_360--Hb_017661_020 Hb_000777_020 Hb_000777_020 Hb_000661_010--Hb_000777_020 Hb_000661_010--Hb_005389_090 Hb_009620_010 Hb_009620_010 Hb_000661_010--Hb_009620_010 Hb_010142_040 Hb_010142_040 Hb_000661_010--Hb_010142_040 Hb_000661_010--Hb_132517_010 Hb_008725_190 Hb_008725_190 Hb_000661_010--Hb_008725_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.88673 0.592286 2.47051 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.26855 0.0818509 0.559323 0

CAGE analysis