Hb_001493_170

Information

Type -
Description -
Location Contig1493: 126819-127959
Sequence    

Annotation

kegg
ID rcu:RCOM_0417940
description hypothetical protein
nr
ID XP_012068799.1
description PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9T3Y1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0417940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12450: 127084-127903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001493_170 0.0 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
2 Hb_003967_010 0.1288362424 - - cytochrome P450, putative [Ricinus communis]
3 Hb_028008_030 0.1395391493 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
4 Hb_000761_030 0.14065841 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
5 Hb_000230_160 0.1452154133 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
6 Hb_008001_020 0.1469857375 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
7 Hb_000081_030 0.148472695 - - BnaC09g05810D [Brassica napus]
8 Hb_000099_020 0.1503710884 desease resistance Gene Name: ABC_membrane PREDICTED: uncharacterized protein LOC103431057 [Malus domestica]
9 Hb_001006_030 0.1578804303 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000286_030 0.160029584 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
11 Hb_003058_180 0.1634245064 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
12 Hb_000487_140 0.1645175618 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
13 Hb_003805_080 0.1665547352 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
14 Hb_001821_030 0.1686579484 - - hypothetical protein JCGZ_13357 [Jatropha curcas]
15 Hb_001862_170 0.1704273974 - - zinc finger protein, putative [Ricinus communis]
16 Hb_001998_260 0.1756068387 - - cytochrome P450, putative [Ricinus communis]
17 Hb_136884_010 0.1794337223 - - Disease resistance protein RFL1, putative [Ricinus communis]
18 Hb_010175_060 0.1832505249 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010326_030 0.1836118214 - - PREDICTED: abscisic acid 8'-hydroxylase 4-like [Jatropha curcas]
20 Hb_001348_220 0.1854145346 - - PREDICTED: defensin Ec-AMP-D2-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_001493_170 Hb_001493_170 Hb_003967_010 Hb_003967_010 Hb_001493_170--Hb_003967_010 Hb_028008_030 Hb_028008_030 Hb_001493_170--Hb_028008_030 Hb_000761_030 Hb_000761_030 Hb_001493_170--Hb_000761_030 Hb_000230_160 Hb_000230_160 Hb_001493_170--Hb_000230_160 Hb_008001_020 Hb_008001_020 Hb_001493_170--Hb_008001_020 Hb_000081_030 Hb_000081_030 Hb_001493_170--Hb_000081_030 Hb_003967_010--Hb_028008_030 Hb_003967_010--Hb_000230_160 Hb_001006_030 Hb_001006_030 Hb_003967_010--Hb_001006_030 Hb_003266_060 Hb_003266_060 Hb_003967_010--Hb_003266_060 Hb_005333_120 Hb_005333_120 Hb_003967_010--Hb_005333_120 Hb_003805_080 Hb_003805_080 Hb_028008_030--Hb_003805_080 Hb_028008_030--Hb_000230_160 Hb_001799_090 Hb_001799_090 Hb_028008_030--Hb_001799_090 Hb_001998_260 Hb_001998_260 Hb_028008_030--Hb_001998_260 Hb_039496_010 Hb_039496_010 Hb_028008_030--Hb_039496_010 Hb_000761_030--Hb_000081_030 Hb_005056_030 Hb_005056_030 Hb_000761_030--Hb_005056_030 Hb_006268_010 Hb_006268_010 Hb_000761_030--Hb_006268_010 Hb_000761_030--Hb_000230_160 Hb_000487_140 Hb_000487_140 Hb_000761_030--Hb_000487_140 Hb_014115_010 Hb_014115_010 Hb_000761_030--Hb_014115_010 Hb_003058_180 Hb_003058_180 Hb_000230_160--Hb_003058_180 Hb_000230_160--Hb_000081_030 Hb_001856_150 Hb_001856_150 Hb_000230_160--Hb_001856_150 Hb_000286_030 Hb_000286_030 Hb_000230_160--Hb_000286_030 Hb_006314_020 Hb_006314_020 Hb_000230_160--Hb_006314_020 Hb_008001_020--Hb_028008_030 Hb_000586_100 Hb_000586_100 Hb_008001_020--Hb_000586_100 Hb_094637_010 Hb_094637_010 Hb_008001_020--Hb_094637_010 Hb_008001_020--Hb_000286_030 Hb_028207_030 Hb_028207_030 Hb_008001_020--Hb_028207_030 Hb_008001_020--Hb_001998_260 Hb_000081_030--Hb_000286_030 Hb_148817_010 Hb_148817_010 Hb_000081_030--Hb_148817_010 Hb_000081_030--Hb_001856_150 Hb_000081_030--Hb_006314_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.679244 15.2944 0.809175 24.4582 0.183334 0.203766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.501518 1.35195 0 31.1502 1.35066

CAGE analysis