Hb_000245_070

Information

Type -
Description -
Location Contig245: 56619-57212
Sequence    

Annotation

kegg
ID pop:POPTR_0001s18950g
description hypothetical protein
nr
ID XP_011046760.1
description PREDICTED: uncharacterized protein LOC105141276 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9P6J2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s18950g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000245_070 0.0 - - PREDICTED: uncharacterized protein LOC105141276 [Populus euphratica]
2 Hb_004757_040 0.1122946404 - - -
3 Hb_000007_020 0.1149292909 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
4 Hb_001269_440 0.1180878927 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
5 Hb_002835_120 0.1196749242 - - PREDICTED: uncharacterized protein LOC105640304 [Jatropha curcas]
6 Hb_006590_040 0.1215546251 - - amino acid permease, putative [Ricinus communis]
7 Hb_008200_010 0.1242792859 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
8 Hb_004125_080 0.1272202924 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
9 Hb_001247_080 0.1292471432 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000638_110 0.129457156 transcription factor TF Family: NAC hypothetical protein POPTR_0007s04250g [Populus trichocarpa]
11 Hb_001141_010 0.1312688676 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
12 Hb_002374_070 0.1332583597 - - amino acid transporter, putative [Ricinus communis]
13 Hb_002411_070 0.1363967985 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
14 Hb_002116_020 0.1386827788 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
15 Hb_005695_050 0.1391929348 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
16 Hb_000201_050 0.1395303158 - - -
17 Hb_001584_250 0.1401425551 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
18 Hb_024066_030 0.1403568808 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
19 Hb_002837_150 0.1403979893 - - hypothetical protein EUGRSUZ_L00324 [Eucalyptus grandis]
20 Hb_001502_010 0.1430311908 - - hypothetical protein JCGZ_04288 [Jatropha curcas]

Gene co-expression network

sample Hb_000245_070 Hb_000245_070 Hb_004757_040 Hb_004757_040 Hb_000245_070--Hb_004757_040 Hb_000007_020 Hb_000007_020 Hb_000245_070--Hb_000007_020 Hb_001269_440 Hb_001269_440 Hb_000245_070--Hb_001269_440 Hb_002835_120 Hb_002835_120 Hb_000245_070--Hb_002835_120 Hb_006590_040 Hb_006590_040 Hb_000245_070--Hb_006590_040 Hb_008200_010 Hb_008200_010 Hb_000245_070--Hb_008200_010 Hb_103632_010 Hb_103632_010 Hb_004757_040--Hb_103632_010 Hb_000638_110 Hb_000638_110 Hb_004757_040--Hb_000638_110 Hb_001141_010 Hb_001141_010 Hb_004757_040--Hb_001141_010 Hb_001255_030 Hb_001255_030 Hb_004757_040--Hb_001255_030 Hb_002837_150 Hb_002837_150 Hb_004757_040--Hb_002837_150 Hb_000007_020--Hb_008200_010 Hb_000007_020--Hb_006590_040 Hb_001584_250 Hb_001584_250 Hb_000007_020--Hb_001584_250 Hb_001502_010 Hb_001502_010 Hb_000007_020--Hb_001502_010 Hb_002116_020 Hb_002116_020 Hb_000007_020--Hb_002116_020 Hb_000201_050 Hb_000201_050 Hb_000007_020--Hb_000201_050 Hb_001269_440--Hb_002837_150 Hb_000086_160 Hb_000086_160 Hb_001269_440--Hb_000086_160 Hb_002025_190 Hb_002025_190 Hb_001269_440--Hb_002025_190 Hb_005183_020 Hb_005183_020 Hb_001269_440--Hb_005183_020 Hb_000025_150 Hb_000025_150 Hb_001269_440--Hb_000025_150 Hb_003212_030 Hb_003212_030 Hb_001269_440--Hb_003212_030 Hb_005736_110 Hb_005736_110 Hb_002835_120--Hb_005736_110 Hb_002835_120--Hb_001141_010 Hb_002835_120--Hb_002837_150 Hb_002835_120--Hb_000638_110 Hb_145975_010 Hb_145975_010 Hb_002835_120--Hb_145975_010 Hb_000349_280 Hb_000349_280 Hb_002835_120--Hb_000349_280 Hb_006590_040--Hb_002116_020 Hb_004125_080 Hb_004125_080 Hb_006590_040--Hb_004125_080 Hb_168031_010 Hb_168031_010 Hb_006590_040--Hb_168031_010 Hb_006590_040--Hb_008200_010 Hb_002411_070 Hb_002411_070 Hb_006590_040--Hb_002411_070 Hb_002374_070 Hb_002374_070 Hb_006590_040--Hb_002374_070 Hb_008200_010--Hb_001502_010 Hb_008200_010--Hb_002374_070 Hb_005695_050 Hb_005695_050 Hb_008200_010--Hb_005695_050 Hb_027402_110 Hb_027402_110 Hb_008200_010--Hb_027402_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.16229 0.248182 22.0293 0.0858708 0.461792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.297497 0.778196

CAGE analysis