Hb_000221_070

Information

Type -
Description -
Location Contig221: 64153-64764
Sequence    

Annotation

kegg
ID rcu:RCOM_1037480
description hypothetical protein
nr
ID XP_002513975.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJQ6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1037480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22767: 64734-64972 , PASA_asmbl_22768: 65420-65848
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000221_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000181_450 0.1584352633 - - hypothetical protein JCGZ_20984 [Jatropha curcas]
3 Hb_160459_030 0.1651844637 - - PREDICTED: uncharacterized protein LOC105648122 [Jatropha curcas]
4 Hb_002984_030 0.1800325076 - - -
5 Hb_006550_010 0.1806539484 - - PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]
6 Hb_001934_010 0.1886175306 - - o-methyltransferase, putative [Ricinus communis]
7 Hb_001277_420 0.1891082705 - - PREDICTED: protein lin-12-like isoform X2 [Populus euphratica]
8 Hb_186647_010 0.210717839 - - -
9 Hb_055531_010 0.2151114176 - - PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Pyrus x bretschneideri]
10 Hb_073096_010 0.223487822 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 45-like [Jatropha curcas]
11 Hb_055993_010 0.2280928623 - - PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]
12 Hb_110854_010 0.229272981 - - -
13 Hb_001357_030 0.2321167256 - - hypothetical protein F383_04880 [Gossypium arboreum]
14 Hb_106728_020 0.232175171 - - cytochrome P450, putative [Ricinus communis]
15 Hb_003216_020 0.2326601293 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
16 Hb_002461_080 0.2328284414 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
17 Hb_005081_030 0.236975009 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]
18 Hb_035006_010 0.2372720637 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
19 Hb_007313_050 0.237840931 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
20 Hb_120117_010 0.2407081301 - - Disease resistance protein RFL1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000221_070 Hb_000221_070 Hb_000181_450 Hb_000181_450 Hb_000221_070--Hb_000181_450 Hb_160459_030 Hb_160459_030 Hb_000221_070--Hb_160459_030 Hb_002984_030 Hb_002984_030 Hb_000221_070--Hb_002984_030 Hb_006550_010 Hb_006550_010 Hb_000221_070--Hb_006550_010 Hb_001934_010 Hb_001934_010 Hb_000221_070--Hb_001934_010 Hb_001277_420 Hb_001277_420 Hb_000221_070--Hb_001277_420 Hb_002461_080 Hb_002461_080 Hb_000181_450--Hb_002461_080 Hb_000181_450--Hb_160459_030 Hb_000181_450--Hb_001934_010 Hb_008554_010 Hb_008554_010 Hb_000181_450--Hb_008554_010 Hb_000181_450--Hb_002984_030 Hb_004195_030 Hb_004195_030 Hb_160459_030--Hb_004195_030 Hb_007313_050 Hb_007313_050 Hb_160459_030--Hb_007313_050 Hb_021443_020 Hb_021443_020 Hb_160459_030--Hb_021443_020 Hb_160459_030--Hb_001934_010 Hb_001059_050 Hb_001059_050 Hb_160459_030--Hb_001059_050 Hb_002984_030--Hb_001934_010 Hb_002984_030--Hb_160459_030 Hb_003216_020 Hb_003216_020 Hb_002984_030--Hb_003216_020 Hb_008643_020 Hb_008643_020 Hb_002984_030--Hb_008643_020 Hb_006550_010--Hb_001277_420 Hb_006550_010--Hb_007313_050 Hb_035006_010 Hb_035006_010 Hb_006550_010--Hb_035006_010 Hb_024357_010 Hb_024357_010 Hb_006550_010--Hb_024357_010 Hb_055531_010 Hb_055531_010 Hb_006550_010--Hb_055531_010 Hb_006550_010--Hb_021443_020 Hb_001610_050 Hb_001610_050 Hb_001934_010--Hb_001610_050 Hb_001934_010--Hb_001277_420 Hb_001016_040 Hb_001016_040 Hb_001934_010--Hb_001016_040 Hb_183209_020 Hb_183209_020 Hb_001934_010--Hb_183209_020 Hb_005695_020 Hb_005695_020 Hb_001277_420--Hb_005695_020 Hb_002894_040 Hb_002894_040 Hb_001277_420--Hb_002894_040 Hb_000002_230 Hb_000002_230 Hb_001277_420--Hb_000002_230 Hb_001277_420--Hb_183209_020 Hb_002053_090 Hb_002053_090 Hb_001277_420--Hb_002053_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.42958 0.369911 2.16038 0 0.370047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0980576 0.0770678 0 0.568236 0

CAGE analysis