Hb_055531_010

Information

Type -
Description -
Location Contig55531: 2-2306
Sequence    

Annotation

kegg
ID pxb:103951097
description probable disease resistance protein At4g27220
nr
ID XP_009360658.1
description PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID U5GGB3
description Putative disease resistance gene NBS-LRR family protein OS=Populus trichocarpa GN=POPTR_0005s04430g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055531_010 0.0 - - PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Pyrus x bretschneideri]
2 Hb_003216_020 0.1317501132 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
3 Hb_001277_420 0.1595481167 - - PREDICTED: protein lin-12-like isoform X2 [Populus euphratica]
4 Hb_002235_370 0.161387888 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
5 Hb_006550_010 0.1619162197 - - PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]
6 Hb_012727_010 0.1652644722 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
7 Hb_148346_010 0.1664769684 - - -
8 Hb_001178_080 0.1673127784 - - PREDICTED: protein kinase PVPK-1 [Jatropha curcas]
9 Hb_001898_060 0.168252506 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002324_040 0.1697440602 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
11 Hb_032050_070 0.1718732359 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
12 Hb_164926_050 0.1721753971 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
13 Hb_053519_010 0.1724893265 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
14 Hb_003529_240 0.1725165261 transcription factor TF Family: AP2 PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2 [Gossypium raimondii]
15 Hb_000914_110 0.1742860253 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
16 Hb_033053_020 0.1746752629 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
17 Hb_000009_300 0.1746761608 - - hypothetical protein CICLE_v10024731mg [Citrus clementina]
18 Hb_000062_490 0.1783666365 - - PREDICTED: lipoxygenase 6, chloroplastic [Jatropha curcas]
19 Hb_001675_310 0.1789585711 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
20 Hb_020967_010 0.1804301431 - - -

Gene co-expression network

sample Hb_055531_010 Hb_055531_010 Hb_003216_020 Hb_003216_020 Hb_055531_010--Hb_003216_020 Hb_001277_420 Hb_001277_420 Hb_055531_010--Hb_001277_420 Hb_002235_370 Hb_002235_370 Hb_055531_010--Hb_002235_370 Hb_006550_010 Hb_006550_010 Hb_055531_010--Hb_006550_010 Hb_012727_010 Hb_012727_010 Hb_055531_010--Hb_012727_010 Hb_148346_010 Hb_148346_010 Hb_055531_010--Hb_148346_010 Hb_032050_070 Hb_032050_070 Hb_003216_020--Hb_032050_070 Hb_000991_110 Hb_000991_110 Hb_003216_020--Hb_000991_110 Hb_001628_030 Hb_001628_030 Hb_003216_020--Hb_001628_030 Hb_009510_050 Hb_009510_050 Hb_003216_020--Hb_009510_050 Hb_000723_060 Hb_000723_060 Hb_003216_020--Hb_000723_060 Hb_001277_420--Hb_006550_010 Hb_005695_020 Hb_005695_020 Hb_001277_420--Hb_005695_020 Hb_002894_040 Hb_002894_040 Hb_001277_420--Hb_002894_040 Hb_000002_230 Hb_000002_230 Hb_001277_420--Hb_000002_230 Hb_183209_020 Hb_183209_020 Hb_001277_420--Hb_183209_020 Hb_002053_090 Hb_002053_090 Hb_001277_420--Hb_002053_090 Hb_010315_100 Hb_010315_100 Hb_002235_370--Hb_010315_100 Hb_004678_030 Hb_004678_030 Hb_002235_370--Hb_004678_030 Hb_164926_050 Hb_164926_050 Hb_002235_370--Hb_164926_050 Hb_002686_210 Hb_002686_210 Hb_002235_370--Hb_002686_210 Hb_003529_240 Hb_003529_240 Hb_002235_370--Hb_003529_240 Hb_002539_050 Hb_002539_050 Hb_002235_370--Hb_002539_050 Hb_007313_050 Hb_007313_050 Hb_006550_010--Hb_007313_050 Hb_035006_010 Hb_035006_010 Hb_006550_010--Hb_035006_010 Hb_024357_010 Hb_024357_010 Hb_006550_010--Hb_024357_010 Hb_021443_020 Hb_021443_020 Hb_006550_010--Hb_021443_020 Hb_002324_040 Hb_002324_040 Hb_012727_010--Hb_002324_040 Hb_003025_150 Hb_003025_150 Hb_012727_010--Hb_003025_150 Hb_003647_040 Hb_003647_040 Hb_012727_010--Hb_003647_040 Hb_001178_080 Hb_001178_080 Hb_012727_010--Hb_001178_080 Hb_001832_210 Hb_001832_210 Hb_012727_010--Hb_001832_210 Hb_003579_040 Hb_003579_040 Hb_012727_010--Hb_003579_040 Hb_148346_010--Hb_002539_050 Hb_148346_010--Hb_004678_030 Hb_000654_050 Hb_000654_050 Hb_148346_010--Hb_000654_050 Hb_148346_010--Hb_010315_100 Hb_000003_740 Hb_000003_740 Hb_148346_010--Hb_000003_740 Hb_001882_150 Hb_001882_150 Hb_148346_010--Hb_001882_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.186863 6.83159 3.81219 8.49656 0.373751 0.906996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.270699 0.141852 0 2.95426 0.694274

CAGE analysis