Hb_006550_010

Information

Type -
Description -
Location Contig6550: 4873-9887
Sequence    

Annotation

kegg
ID egr:104421772
description vacuolar amino acid transporter 1
nr
ID XP_010032152.1
description PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]
swissprot
ID P47082
description Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1
trembl
ID A0A059ABV3
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01066 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vacuolar amino acid transporter 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52640: 10207-10309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006550_010 0.0 - - PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]
2 Hb_001277_420 0.1132294596 - - PREDICTED: protein lin-12-like isoform X2 [Populus euphratica]
3 Hb_007313_050 0.1452936373 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
4 Hb_035006_010 0.151103185 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
5 Hb_024357_010 0.1599984584 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
6 Hb_055531_010 0.1619162197 - - PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Pyrus x bretschneideri]
7 Hb_021443_020 0.1636653447 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
8 Hb_160459_030 0.1641878582 - - PREDICTED: uncharacterized protein LOC105648122 [Jatropha curcas]
9 Hb_003939_090 0.1642512275 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
10 Hb_003216_020 0.1654409875 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
11 Hb_000661_010 0.1664080587 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
12 Hb_005389_090 0.1706143143 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
13 Hb_001934_010 0.1710658341 - - o-methyltransferase, putative [Ricinus communis]
14 Hb_005695_020 0.1750237088 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
15 Hb_038718_010 0.1755679438 - - Disease resistance protein RFL1, putative [Ricinus communis]
16 Hb_001213_080 0.175670907 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
17 Hb_120117_010 0.1789575027 - - Disease resistance protein RFL1, putative [Ricinus communis]
18 Hb_000991_110 0.1795688172 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
19 Hb_002894_040 0.1801938282 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000221_070 0.1806539484 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006550_010 Hb_006550_010 Hb_001277_420 Hb_001277_420 Hb_006550_010--Hb_001277_420 Hb_007313_050 Hb_007313_050 Hb_006550_010--Hb_007313_050 Hb_035006_010 Hb_035006_010 Hb_006550_010--Hb_035006_010 Hb_024357_010 Hb_024357_010 Hb_006550_010--Hb_024357_010 Hb_055531_010 Hb_055531_010 Hb_006550_010--Hb_055531_010 Hb_021443_020 Hb_021443_020 Hb_006550_010--Hb_021443_020 Hb_005695_020 Hb_005695_020 Hb_001277_420--Hb_005695_020 Hb_002894_040 Hb_002894_040 Hb_001277_420--Hb_002894_040 Hb_000002_230 Hb_000002_230 Hb_001277_420--Hb_000002_230 Hb_183209_020 Hb_183209_020 Hb_001277_420--Hb_183209_020 Hb_002053_090 Hb_002053_090 Hb_001277_420--Hb_002053_090 Hb_007313_050--Hb_021443_020 Hb_001213_080 Hb_001213_080 Hb_007313_050--Hb_001213_080 Hb_003939_090 Hb_003939_090 Hb_007313_050--Hb_003939_090 Hb_001059_050 Hb_001059_050 Hb_007313_050--Hb_001059_050 Hb_007313_050--Hb_035006_010 Hb_000286_210 Hb_000286_210 Hb_007313_050--Hb_000286_210 Hb_035006_010--Hb_021443_020 Hb_035006_010--Hb_003939_090 Hb_035006_010--Hb_000286_210 Hb_005900_020 Hb_005900_020 Hb_035006_010--Hb_005900_020 Hb_035006_010--Hb_001059_050 Hb_001897_030 Hb_001897_030 Hb_024357_010--Hb_001897_030 Hb_005389_090 Hb_005389_090 Hb_024357_010--Hb_005389_090 Hb_002239_030 Hb_002239_030 Hb_024357_010--Hb_002239_030 Hb_132517_010 Hb_132517_010 Hb_024357_010--Hb_132517_010 Hb_133508_010 Hb_133508_010 Hb_024357_010--Hb_133508_010 Hb_000723_060 Hb_000723_060 Hb_024357_010--Hb_000723_060 Hb_003216_020 Hb_003216_020 Hb_055531_010--Hb_003216_020 Hb_055531_010--Hb_001277_420 Hb_002235_370 Hb_002235_370 Hb_055531_010--Hb_002235_370 Hb_012727_010 Hb_012727_010 Hb_055531_010--Hb_012727_010 Hb_148346_010 Hb_148346_010 Hb_055531_010--Hb_148346_010 Hb_021443_020--Hb_001059_050 Hb_021443_020--Hb_000286_210 Hb_001610_050 Hb_001610_050 Hb_021443_020--Hb_001610_050 Hb_001227_010 Hb_001227_010 Hb_021443_020--Hb_001227_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0351387 6.72494 1.66776 8.31912 0.325872 0.319348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.128771 0.202612 0.0475344 1.89114 0.10585

CAGE analysis