Hb_000936_040

Information

Type -
Description -
Location Contig936: 59007-65275
Sequence    

Annotation

kegg
ID rcu:RCOM_0615560
description amino acid transporter, putative
nr
ID KDP47155.1
description hypothetical protein JCGZ_00046 [Jatropha curcas]
swissprot
ID Q9SX98
description Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1
trembl
ID A0A067LQE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00046 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lysine histidine transporter-like 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62998: 59243-62083 , PASA_asmbl_62999: 64972-65293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000936_040 0.0 - - hypothetical protein JCGZ_00046 [Jatropha curcas]
2 Hb_004611_060 0.1943996628 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
3 Hb_009476_150 0.2115663242 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
4 Hb_000438_150 0.2163439092 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7 [Jatropha curcas]
5 Hb_048944_020 0.2241427291 - - hypothetical protein POPTR_0014s002002g, partial [Populus trichocarpa]
6 Hb_035761_010 0.2253146871 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
7 Hb_049958_010 0.2282563968 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_187697_010 0.2322480057 - - TMV resistance protein N, putative [Ricinus communis]
9 Hb_179679_010 0.2411555873 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
10 Hb_003913_030 0.2429422467 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
11 Hb_003637_020 0.2534792396 - - conserved hypothetical protein [Ricinus communis]
12 Hb_042553_010 0.253841669 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
13 Hb_000029_280 0.2545932164 - - PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
14 Hb_155642_010 0.2559565319 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
15 Hb_002233_070 0.2601953969 - - unnamed protein product [Vitis vinifera]
16 Hb_000960_020 0.2609338135 - - -
17 Hb_012258_020 0.2609586333 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
18 Hb_015928_020 0.2620121522 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
19 Hb_003060_050 0.2625597871 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
20 Hb_070541_030 0.2633949827 - - -

Gene co-expression network

sample Hb_000936_040 Hb_000936_040 Hb_004611_060 Hb_004611_060 Hb_000936_040--Hb_004611_060 Hb_009476_150 Hb_009476_150 Hb_000936_040--Hb_009476_150 Hb_000438_150 Hb_000438_150 Hb_000936_040--Hb_000438_150 Hb_048944_020 Hb_048944_020 Hb_000936_040--Hb_048944_020 Hb_035761_010 Hb_035761_010 Hb_000936_040--Hb_035761_010 Hb_049958_010 Hb_049958_010 Hb_000936_040--Hb_049958_010 Hb_000699_190 Hb_000699_190 Hb_004611_060--Hb_000699_190 Hb_070541_030 Hb_070541_030 Hb_004611_060--Hb_070541_030 Hb_187697_010 Hb_187697_010 Hb_004611_060--Hb_187697_010 Hb_004611_060--Hb_035761_010 Hb_011382_050 Hb_011382_050 Hb_004611_060--Hb_011382_050 Hb_009476_150--Hb_000438_150 Hb_012258_020 Hb_012258_020 Hb_009476_150--Hb_012258_020 Hb_002233_070 Hb_002233_070 Hb_009476_150--Hb_002233_070 Hb_001357_280 Hb_001357_280 Hb_009476_150--Hb_001357_280 Hb_006286_010 Hb_006286_010 Hb_009476_150--Hb_006286_010 Hb_000732_240 Hb_000732_240 Hb_009476_150--Hb_000732_240 Hb_000099_190 Hb_000099_190 Hb_000438_150--Hb_000099_190 Hb_000438_150--Hb_000732_240 Hb_000438_150--Hb_048944_020 Hb_002196_010 Hb_002196_010 Hb_000438_150--Hb_002196_010 Hb_007157_060 Hb_007157_060 Hb_000438_150--Hb_007157_060 Hb_101370_010 Hb_101370_010 Hb_048944_020--Hb_101370_010 Hb_048944_020--Hb_035761_010 Hb_005056_100 Hb_005056_100 Hb_048944_020--Hb_005056_100 Hb_048944_020--Hb_000099_190 Hb_000189_070 Hb_000189_070 Hb_048944_020--Hb_000189_070 Hb_035761_010--Hb_000099_190 Hb_035761_010--Hb_000732_240 Hb_187021_010 Hb_187021_010 Hb_035761_010--Hb_187021_010 Hb_035761_010--Hb_101370_010 Hb_154538_010 Hb_154538_010 Hb_035761_010--Hb_154538_010 Hb_059641_010 Hb_059641_010 Hb_049958_010--Hb_059641_010 Hb_000571_150 Hb_000571_150 Hb_049958_010--Hb_000571_150 Hb_179679_010 Hb_179679_010 Hb_049958_010--Hb_179679_010 Hb_126506_010 Hb_126506_010 Hb_049958_010--Hb_126506_010 Hb_169329_010 Hb_169329_010 Hb_049958_010--Hb_169329_010 Hb_000123_030 Hb_000123_030 Hb_049958_010--Hb_000123_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.90963 8.92737 1.02017 5.87649 1.15054 1.54648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.474041 0.0517433

CAGE analysis