Hb_070541_030

Information

Type -
Description -
Location Contig70541: 2469-4674
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_070541_030 0.0 - - -
2 Hb_004611_060 0.1893296123 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
3 Hb_001103_070 0.1938075721 - - Patellin-3, putative [Ricinus communis]
4 Hb_145317_010 0.2141596776 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
5 Hb_000732_240 0.2185571837 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
6 Hb_035761_010 0.2196252947 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
7 Hb_186304_010 0.2225183606 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
8 Hb_018691_010 0.2309737859 - - -
9 Hb_154538_010 0.2366730089 - - -
10 Hb_049958_010 0.244822399 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
11 Hb_003854_020 0.246316272 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
12 Hb_001518_060 0.2474341789 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
13 Hb_177152_010 0.2507807335 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
14 Hb_169329_010 0.2539407978 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
15 Hb_102437_010 0.2559343799 - - PREDICTED: B-cell receptor-associated protein 31 [Beta vulgaris subsp. vulgaris]
16 Hb_106688_010 0.2562951668 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
17 Hb_179679_010 0.2569650241 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
18 Hb_000258_360 0.2595346483 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
19 Hb_048944_020 0.2598951359 - - hypothetical protein POPTR_0014s002002g, partial [Populus trichocarpa]
20 Hb_000099_190 0.2605396764 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]

Gene co-expression network

sample Hb_070541_030 Hb_070541_030 Hb_004611_060 Hb_004611_060 Hb_070541_030--Hb_004611_060 Hb_001103_070 Hb_001103_070 Hb_070541_030--Hb_001103_070 Hb_145317_010 Hb_145317_010 Hb_070541_030--Hb_145317_010 Hb_000732_240 Hb_000732_240 Hb_070541_030--Hb_000732_240 Hb_035761_010 Hb_035761_010 Hb_070541_030--Hb_035761_010 Hb_186304_010 Hb_186304_010 Hb_070541_030--Hb_186304_010 Hb_000699_190 Hb_000699_190 Hb_004611_060--Hb_000699_190 Hb_000936_040 Hb_000936_040 Hb_004611_060--Hb_000936_040 Hb_187697_010 Hb_187697_010 Hb_004611_060--Hb_187697_010 Hb_004611_060--Hb_035761_010 Hb_011382_050 Hb_011382_050 Hb_004611_060--Hb_011382_050 Hb_001103_070--Hb_000732_240 Hb_001004_120 Hb_001004_120 Hb_001103_070--Hb_001004_120 Hb_000099_190 Hb_000099_190 Hb_001103_070--Hb_000099_190 Hb_001103_070--Hb_145317_010 Hb_160405_010 Hb_160405_010 Hb_001103_070--Hb_160405_010 Hb_003082_040 Hb_003082_040 Hb_001103_070--Hb_003082_040 Hb_008054_050 Hb_008054_050 Hb_145317_010--Hb_008054_050 Hb_009247_010 Hb_009247_010 Hb_145317_010--Hb_009247_010 Hb_106688_010 Hb_106688_010 Hb_145317_010--Hb_106688_010 Hb_154538_010 Hb_154538_010 Hb_145317_010--Hb_154538_010 Hb_004374_130 Hb_004374_130 Hb_145317_010--Hb_004374_130 Hb_009393_200 Hb_009393_200 Hb_145317_010--Hb_009393_200 Hb_000732_240--Hb_000099_190 Hb_101370_010 Hb_101370_010 Hb_000732_240--Hb_101370_010 Hb_000732_240--Hb_035761_010 Hb_049915_010 Hb_049915_010 Hb_000732_240--Hb_049915_010 Hb_017159_010 Hb_017159_010 Hb_000732_240--Hb_017159_010 Hb_001357_280 Hb_001357_280 Hb_000732_240--Hb_001357_280 Hb_035761_010--Hb_000099_190 Hb_187021_010 Hb_187021_010 Hb_035761_010--Hb_187021_010 Hb_035761_010--Hb_101370_010 Hb_035761_010--Hb_154538_010 Hb_048944_020 Hb_048944_020 Hb_035761_010--Hb_048944_020 Hb_163400_010 Hb_163400_010 Hb_186304_010--Hb_163400_010 Hb_102437_010 Hb_102437_010 Hb_186304_010--Hb_102437_010 Hb_182249_010 Hb_182249_010 Hb_186304_010--Hb_182249_010 Hb_134488_010 Hb_134488_010 Hb_186304_010--Hb_134488_010 Hb_071781_010 Hb_071781_010 Hb_186304_010--Hb_071781_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0520705 0.327518 0.15816 0.412916 0.118569 0.191037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.091949 0

CAGE analysis