Hb_005237_070

Information

Type transcription factor
Description TF Family: HB
Location Contig5237: 108200-109615
Sequence    

Annotation

kegg
ID pop:POPTR_0014s02540g
description homeobox-leucine zipper transcription factor family protein
nr
ID XP_011029533.1
description PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
swissprot
ID Q6X7J9
description WUSCHEL-related homeobox 4 OS=Arabidopsis thaliana GN=WOX4 PE=2 SV=1
trembl
ID W8P768
description WOX4a OS=Populus tomentosa GN=WOX4a PE=2 SV=1
Gene Ontology
ID GO:0005634
description wuschel-related homeobox 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46919: 108251-109457
cDNA
(Sanger)
(ID:Location)		 006_G18.ab1: 108251-109455

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005237_070 0.0 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
2 Hb_002289_110 0.1073420725 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
3 Hb_001856_160 0.1263217074 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001799_090 0.1322986829 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
5 Hb_028008_030 0.1441517296 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
6 Hb_005144_100 0.1478627508 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
7 Hb_005489_120 0.1504978816 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
8 Hb_001998_260 0.1519755981 - - cytochrome P450, putative [Ricinus communis]
9 Hb_001369_620 0.153780491 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
10 Hb_004122_030 0.1549537867 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
11 Hb_000586_100 0.1644725584 - - conserved hypothetical protein [Ricinus communis]
12 Hb_008705_040 0.1675393785 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
13 Hb_003266_060 0.1682501351 - - PREDICTED: basic 7S globulin-like [Populus euphratica]
14 Hb_000300_170 0.1695838782 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
15 Hb_029866_080 0.1704916888 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
16 Hb_001053_110 0.1707925284 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
17 Hb_001006_030 0.1722472375 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003052_120 0.1756023926 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
19 Hb_000041_290 0.1759683376 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
20 Hb_001963_020 0.1769287662 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005237_070 Hb_005237_070 Hb_002289_110 Hb_002289_110 Hb_005237_070--Hb_002289_110 Hb_001856_160 Hb_001856_160 Hb_005237_070--Hb_001856_160 Hb_001799_090 Hb_001799_090 Hb_005237_070--Hb_001799_090 Hb_028008_030 Hb_028008_030 Hb_005237_070--Hb_028008_030 Hb_005144_100 Hb_005144_100 Hb_005237_070--Hb_005144_100 Hb_005489_120 Hb_005489_120 Hb_005237_070--Hb_005489_120 Hb_002289_110--Hb_001799_090 Hb_002289_110--Hb_001856_160 Hb_001998_260 Hb_001998_260 Hb_002289_110--Hb_001998_260 Hb_029866_080 Hb_029866_080 Hb_002289_110--Hb_029866_080 Hb_002289_110--Hb_028008_030 Hb_001856_160--Hb_001799_090 Hb_006153_130 Hb_006153_130 Hb_001856_160--Hb_006153_130 Hb_003376_300 Hb_003376_300 Hb_001856_160--Hb_003376_300 Hb_001856_160--Hb_005489_120 Hb_000454_200 Hb_000454_200 Hb_001856_160--Hb_000454_200 Hb_001799_090--Hb_001998_260 Hb_001799_090--Hb_028008_030 Hb_000069_520 Hb_000069_520 Hb_001799_090--Hb_000069_520 Hb_001799_090--Hb_005489_120 Hb_003805_080 Hb_003805_080 Hb_028008_030--Hb_003805_080 Hb_000230_160 Hb_000230_160 Hb_028008_030--Hb_000230_160 Hb_028008_030--Hb_001998_260 Hb_039496_010 Hb_039496_010 Hb_028008_030--Hb_039496_010 Hb_003967_010 Hb_003967_010 Hb_028008_030--Hb_003967_010 Hb_002217_210 Hb_002217_210 Hb_005144_100--Hb_002217_210 Hb_005144_100--Hb_001998_260 Hb_003266_060 Hb_003266_060 Hb_005144_100--Hb_003266_060 Hb_008959_050 Hb_008959_050 Hb_005144_100--Hb_008959_050 Hb_004635_040 Hb_004635_040 Hb_005144_100--Hb_004635_040 Hb_005144_100--Hb_001799_090 Hb_000300_170 Hb_000300_170 Hb_005489_120--Hb_000300_170 Hb_001053_110 Hb_001053_110 Hb_005489_120--Hb_001053_110 Hb_000676_170 Hb_000676_170 Hb_005489_120--Hb_000676_170 Hb_012787_050 Hb_012787_050 Hb_005489_120--Hb_012787_050 Hb_000022_280 Hb_000022_280 Hb_005489_120--Hb_000022_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.06979 18.4402 7.90453 29.9613 1.53265 0.451162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 31.4799 1.86659

CAGE analysis