Hb_000479_100

Information

Type -
Description -
Location Contig479: 66516-67140
Sequence    

Annotation

kegg
ID sita:101773221
description alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic-like
nr
ID KHG25449.1
description Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic [Gossypium arboreum]
swissprot
ID P53535
description Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum GN=STP-1 PE=1 SV=1
trembl
ID A0A0B0PLY8
description Alpha-1,4 glucan phosphorylase OS=Gossypium arboreum GN=F383_00125 PE=3 SV=1
Gene Ontology
ID GO:0005737
description alpha- glucan phosphorylase l chloroplastic amyloplastic isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000479_100 0.0 - - Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic [Gossypium arboreum]
2 Hb_106677_010 0.0179021379 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
3 Hb_002853_010 0.0259925538 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002105_070 0.0950223571 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005699_100 0.096491146 - - hypothetical protein POPTR_0013s12390g [Populus trichocarpa]
6 Hb_116486_010 0.0983846582 - - MADS-box transcription factor, partial [Sapria himalayana]
7 Hb_005276_180 0.0983958023 - - hypothetical protein POPTR_0005s23040g [Populus trichocarpa]
8 Hb_000027_020 0.0988562466 - - Nonspecific lipid-transfer protein, putative [Ricinus communis]
9 Hb_001688_040 0.0998939414 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005694_140 0.1002327321 - - protein with unknown function [Ricinus communis]
11 Hb_000056_140 0.1005750527 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE6 [Vitis vinifera]
12 Hb_001946_420 0.1052690967 - - protein with unknown function [Ricinus communis]
13 Hb_092416_020 0.1065911953 - - protein with unknown function [Ricinus communis]
14 Hb_031546_010 0.1114047099 - - hypothetical protein JCGZ_21533 [Jatropha curcas]
15 Hb_000645_040 0.1146293195 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
16 Hb_001804_020 0.1162355697 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
17 Hb_003058_090 0.1202480139 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
18 Hb_000629_140 0.1261020833 - - hypothetical protein SORBIDRAFT_04g013083 [Sorghum bicolor]
19 Hb_007441_320 0.1292974026 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
20 Hb_000269_050 0.1324129071 - - PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]

Gene co-expression network

sample Hb_000479_100 Hb_000479_100 Hb_106677_010 Hb_106677_010 Hb_000479_100--Hb_106677_010 Hb_002853_010 Hb_002853_010 Hb_000479_100--Hb_002853_010 Hb_002105_070 Hb_002105_070 Hb_000479_100--Hb_002105_070 Hb_005699_100 Hb_005699_100 Hb_000479_100--Hb_005699_100 Hb_116486_010 Hb_116486_010 Hb_000479_100--Hb_116486_010 Hb_005276_180 Hb_005276_180 Hb_000479_100--Hb_005276_180 Hb_106677_010--Hb_002853_010 Hb_001688_040 Hb_001688_040 Hb_106677_010--Hb_001688_040 Hb_000056_140 Hb_000056_140 Hb_106677_010--Hb_000056_140 Hb_106677_010--Hb_005276_180 Hb_001946_420 Hb_001946_420 Hb_106677_010--Hb_001946_420 Hb_002853_010--Hb_116486_010 Hb_005694_140 Hb_005694_140 Hb_002853_010--Hb_005694_140 Hb_002853_010--Hb_002105_070 Hb_000629_140 Hb_000629_140 Hb_002853_010--Hb_000629_140 Hb_002105_070--Hb_116486_010 Hb_002105_070--Hb_005694_140 Hb_000027_020 Hb_000027_020 Hb_002105_070--Hb_000027_020 Hb_002105_070--Hb_000629_140 Hb_002105_070--Hb_005699_100 Hb_000002_190 Hb_000002_190 Hb_005699_100--Hb_000002_190 Hb_000003_520 Hb_000003_520 Hb_005699_100--Hb_000003_520 Hb_000005_170 Hb_000005_170 Hb_005699_100--Hb_000005_170 Hb_000009_230 Hb_000009_230 Hb_005699_100--Hb_000009_230 Hb_000011_110 Hb_000011_110 Hb_005699_100--Hb_000011_110 Hb_000012_390 Hb_000012_390 Hb_005699_100--Hb_000012_390 Hb_116486_010--Hb_005694_140 Hb_116486_010--Hb_000629_140 Hb_000048_120 Hb_000048_120 Hb_116486_010--Hb_000048_120 Hb_125152_010 Hb_125152_010 Hb_116486_010--Hb_125152_010 Hb_116486_010--Hb_000027_020 Hb_005276_180--Hb_001688_040 Hb_005276_180--Hb_000056_140 Hb_005276_180--Hb_001946_420 Hb_092416_020 Hb_092416_020 Hb_005276_180--Hb_092416_020 Hb_031546_010 Hb_031546_010 Hb_005276_180--Hb_031546_010 Hb_005276_180--Hb_005699_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.106096 0 5.34213 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0988461 0

CAGE analysis