Hb_001621_160

Information

Type -
Description -
Location Contig1621: 214114-215442
Sequence    

Annotation

kegg
ID rcu:RCOM_0040620
description Aspartic proteinase nepenthesin-1 precursor, putative
nr
ID XP_002531578.1
description Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
swissprot
ID Q9LZL3
description Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1
trembl
ID B9T009
description Aspartic proteinase nepenthesin-1, putative OS=Ricinus communis GN=RCOM_0040620 PE=4 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase pcs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14637: 214391-214815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001621_160 0.0 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
2 Hb_005054_050 0.219393727 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
3 Hb_002374_560 0.2252574157 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like [Populus euphratica]
4 Hb_001504_090 0.2289157148 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
5 Hb_020156_060 0.233875025 - - PREDICTED: ankyrin-1-like [Prunus mume]
6 Hb_000421_130 0.2517969446 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
7 Hb_005565_080 0.2572134127 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
8 Hb_010174_210 0.2594425091 - - PREDICTED: small heat shock protein, chloroplastic-like isoform X1 [Jatropha curcas]
9 Hb_001390_010 0.2647299148 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
10 Hb_002518_300 0.275037803 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
11 Hb_029508_010 0.2754485779 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
12 Hb_000749_110 0.2835084538 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
13 Hb_008147_050 0.2900015309 - - PREDICTED: uncharacterized protein LOC105646845 [Jatropha curcas]
14 Hb_168893_010 0.2944651417 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
15 Hb_001329_260 0.2989887634 - - PREDICTED: uncharacterized protein LOC105642694 isoform X1 [Jatropha curcas]
16 Hb_030627_040 0.3008710878 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
17 Hb_000001_160 0.3033703069 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X2 [Jatropha curcas]
18 Hb_120662_010 0.3093560322 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
19 Hb_085375_010 0.3128790437 - - protein with unknown function [Ricinus communis]
20 Hb_004994_340 0.313247982 - - -

Gene co-expression network

sample Hb_001621_160 Hb_001621_160 Hb_005054_050 Hb_005054_050 Hb_001621_160--Hb_005054_050 Hb_002374_560 Hb_002374_560 Hb_001621_160--Hb_002374_560 Hb_001504_090 Hb_001504_090 Hb_001621_160--Hb_001504_090 Hb_020156_060 Hb_020156_060 Hb_001621_160--Hb_020156_060 Hb_000421_130 Hb_000421_130 Hb_001621_160--Hb_000421_130 Hb_005565_080 Hb_005565_080 Hb_001621_160--Hb_005565_080 Hb_002265_030 Hb_002265_030 Hb_005054_050--Hb_002265_030 Hb_000215_260 Hb_000215_260 Hb_005054_050--Hb_000215_260 Hb_000329_420 Hb_000329_420 Hb_005054_050--Hb_000329_420 Hb_120662_010 Hb_120662_010 Hb_005054_050--Hb_120662_010 Hb_005054_050--Hb_002374_560 Hb_000001_160 Hb_000001_160 Hb_002374_560--Hb_000001_160 Hb_002326_060 Hb_002326_060 Hb_002374_560--Hb_002326_060 Hb_047661_010 Hb_047661_010 Hb_002374_560--Hb_047661_010 Hb_001159_210 Hb_001159_210 Hb_002374_560--Hb_001159_210 Hb_002518_300 Hb_002518_300 Hb_002374_560--Hb_002518_300 Hb_008147_050 Hb_008147_050 Hb_001504_090--Hb_008147_050 Hb_010254_020 Hb_010254_020 Hb_001504_090--Hb_010254_020 Hb_002039_050 Hb_002039_050 Hb_001504_090--Hb_002039_050 Hb_001504_090--Hb_000421_130 Hb_001504_090--Hb_000001_160 Hb_000366_190 Hb_000366_190 Hb_001504_090--Hb_000366_190 Hb_000205_150 Hb_000205_150 Hb_020156_060--Hb_000205_150 Hb_010174_210 Hb_010174_210 Hb_020156_060--Hb_010174_210 Hb_168893_010 Hb_168893_010 Hb_020156_060--Hb_168893_010 Hb_029980_010 Hb_029980_010 Hb_020156_060--Hb_029980_010 Hb_011639_080 Hb_011639_080 Hb_020156_060--Hb_011639_080 Hb_000421_130--Hb_008147_050 Hb_002875_050 Hb_002875_050 Hb_000421_130--Hb_002875_050 Hb_001390_010 Hb_001390_010 Hb_000421_130--Hb_001390_010 Hb_000207_190 Hb_000207_190 Hb_000421_130--Hb_000207_190 Hb_001195_190 Hb_001195_190 Hb_000421_130--Hb_001195_190 Hb_000749_110 Hb_000749_110 Hb_005565_080--Hb_000749_110 Hb_000318_260 Hb_000318_260 Hb_005565_080--Hb_000318_260 Hb_005928_080 Hb_005928_080 Hb_005565_080--Hb_005928_080 Hb_005565_080--Hb_002518_300 Hb_001329_260 Hb_001329_260 Hb_005565_080--Hb_001329_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.87307 1.52566 2.73476 17.9379 54.8335 12.938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18624 0.311061 0.951539 0.192235 10.5318

CAGE analysis