Hb_000205_150

Information

Type -
Description -
Location Contig205: 223779-227806
Sequence    

Annotation

kegg
ID egr:104432548
description uncharacterized LOC104432548
nr
ID XP_012089353.1
description PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A059D3Z7
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02153 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21115: 224668-225242 , PASA_asmbl_21116: 226412-226802
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_150 0.0 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
2 Hb_020156_060 0.1982991051 - - PREDICTED: ankyrin-1-like [Prunus mume]
3 Hb_000243_090 0.2326139173 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
4 Hb_000613_040 0.2346509863 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011639_080 0.2395576338 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
6 Hb_154114_030 0.2400855414 - - amino acid binding protein, putative [Ricinus communis]
7 Hb_006913_090 0.2595169244 - - PREDICTED: uncharacterized protein LOC101215996 [Cucumis sativus]
8 Hb_000505_110 0.2649849707 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
9 Hb_002473_040 0.2711725706 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
10 Hb_003449_060 0.277625988 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
11 Hb_004635_130 0.2890809332 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
12 Hb_003026_030 0.289306187 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
13 Hb_001195_190 0.2948308078 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000789_130 0.2949900351 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
15 Hb_149838_010 0.2957699931 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
16 Hb_002447_020 0.2981707216 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001051_090 0.2982465931 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
18 Hb_168893_010 0.3039465065 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
19 Hb_085375_010 0.3056728951 - - protein with unknown function [Ricinus communis]
20 Hb_000207_190 0.3093442077 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]

Gene co-expression network

sample Hb_000205_150 Hb_000205_150 Hb_020156_060 Hb_020156_060 Hb_000205_150--Hb_020156_060 Hb_000243_090 Hb_000243_090 Hb_000205_150--Hb_000243_090 Hb_000613_040 Hb_000613_040 Hb_000205_150--Hb_000613_040 Hb_011639_080 Hb_011639_080 Hb_000205_150--Hb_011639_080 Hb_154114_030 Hb_154114_030 Hb_000205_150--Hb_154114_030 Hb_006913_090 Hb_006913_090 Hb_000205_150--Hb_006913_090 Hb_010174_210 Hb_010174_210 Hb_020156_060--Hb_010174_210 Hb_168893_010 Hb_168893_010 Hb_020156_060--Hb_168893_010 Hb_001621_160 Hb_001621_160 Hb_020156_060--Hb_001621_160 Hb_029980_010 Hb_029980_010 Hb_020156_060--Hb_029980_010 Hb_020156_060--Hb_011639_080 Hb_000243_090--Hb_011639_080 Hb_007416_370 Hb_007416_370 Hb_000243_090--Hb_007416_370 Hb_098315_070 Hb_098315_070 Hb_000243_090--Hb_098315_070 Hb_149838_010 Hb_149838_010 Hb_000243_090--Hb_149838_010 Hb_007456_010 Hb_007456_010 Hb_000243_090--Hb_007456_010 Hb_000265_220 Hb_000265_220 Hb_000243_090--Hb_000265_220 Hb_007229_030 Hb_007229_030 Hb_000613_040--Hb_007229_030 Hb_027472_130 Hb_027472_130 Hb_000613_040--Hb_027472_130 Hb_000010_130 Hb_000010_130 Hb_000613_040--Hb_000010_130 Hb_000313_290 Hb_000313_290 Hb_000613_040--Hb_000313_290 Hb_000318_240 Hb_000318_240 Hb_000613_040--Hb_000318_240 Hb_000454_190 Hb_000454_190 Hb_011639_080--Hb_000454_190 Hb_019516_030 Hb_019516_030 Hb_011639_080--Hb_019516_030 Hb_006570_010 Hb_006570_010 Hb_011639_080--Hb_006570_010 Hb_002150_110 Hb_002150_110 Hb_011639_080--Hb_002150_110 Hb_000175_630 Hb_000175_630 Hb_011639_080--Hb_000175_630 Hb_003449_060 Hb_003449_060 Hb_154114_030--Hb_003449_060 Hb_002475_120 Hb_002475_120 Hb_154114_030--Hb_002475_120 Hb_001269_310 Hb_001269_310 Hb_154114_030--Hb_001269_310 Hb_012586_050 Hb_012586_050 Hb_154114_030--Hb_012586_050 Hb_004907_090 Hb_004907_090 Hb_154114_030--Hb_004907_090 Hb_002151_010 Hb_002151_010 Hb_154114_030--Hb_002151_010 Hb_085375_010 Hb_085375_010 Hb_006913_090--Hb_085375_010 Hb_004635_130 Hb_004635_130 Hb_006913_090--Hb_004635_130 Hb_097433_010 Hb_097433_010 Hb_006913_090--Hb_097433_010 Hb_006913_090--Hb_000243_090 Hb_002814_120 Hb_002814_120 Hb_006913_090--Hb_002814_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.169324 0.389987 2.96856 1.36357 6.25842 1.17594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.296058 0.129395 0 0.909607 1.35089

CAGE analysis