Hb_007229_030

Information

Type -
Description -
Location Contig7229: 16701-19418
Sequence    

Annotation

kegg
ID rcu:RCOM_1608670
description fk506-binding protein, putative (EC:5.2.1.8)
nr
ID XP_012083663.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Jatropha curcas]
swissprot
ID Q0WRJ7
description Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic OS=Arabidopsis thaliana GN=FKBP20-2 PE=1 SV=1
trembl
ID A0A067JY72
description Peptidyl-prolyl cis-trans isomerase OS=Jatropha curcas GN=JCGZ_14598 PE=4 SV=1
Gene Ontology
ID GO:0031977
description peptidyl-prolyl cis-trans isomerase fkbp20- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55735: 16728-17436 , PASA_asmbl_55736: 17677-19332
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007229_030 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Jatropha curcas]
2 Hb_000010_130 0.1504904622 - - PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic [Pyrus x bretschneideri]
3 Hb_001352_080 0.1719983541 - - PREDICTED: uncharacterized protein At5g02240 [Jatropha curcas]
4 Hb_000424_070 0.1785760927 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
5 Hb_002960_110 0.1880675715 - - PREDICTED: synaptotagmin-2 isoform X1 [Jatropha curcas]
6 Hb_001959_240 0.1896533611 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_002498_170 0.1935449331 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
8 Hb_006618_070 0.195864097 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
9 Hb_000313_290 0.1978881558 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_000613_040 0.2007631691 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004052_070 0.2009022407 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
12 Hb_000418_090 0.2063159228 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_002400_010 0.2065013071 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
14 Hb_003992_050 0.2107778127 - - delta 9 desaturase, putative [Ricinus communis]
15 Hb_001638_310 0.2131445323 - - ribonucleoprotein, chloroplast, putative [Ricinus communis]
16 Hb_006846_160 0.2167089226 - - electron transporter, putative [Ricinus communis]
17 Hb_030131_020 0.2192044684 - - Carboxypeptidase B2 precursor, putative [Ricinus communis]
18 Hb_001624_040 0.2200370451 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
19 Hb_006911_070 0.2224597325 - - 50S ribosomal protein L1p, putative [Ricinus communis]
20 Hb_000603_270 0.2230367448 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]

Gene co-expression network

sample Hb_007229_030 Hb_007229_030 Hb_000010_130 Hb_000010_130 Hb_007229_030--Hb_000010_130 Hb_001352_080 Hb_001352_080 Hb_007229_030--Hb_001352_080 Hb_000424_070 Hb_000424_070 Hb_007229_030--Hb_000424_070 Hb_002960_110 Hb_002960_110 Hb_007229_030--Hb_002960_110 Hb_001959_240 Hb_001959_240 Hb_007229_030--Hb_001959_240 Hb_002498_170 Hb_002498_170 Hb_007229_030--Hb_002498_170 Hb_015292_040 Hb_015292_040 Hb_000010_130--Hb_015292_040 Hb_000010_130--Hb_000424_070 Hb_000313_290 Hb_000313_290 Hb_000010_130--Hb_000313_290 Hb_030131_020 Hb_030131_020 Hb_000010_130--Hb_030131_020 Hb_000418_090 Hb_000418_090 Hb_000010_130--Hb_000418_090 Hb_006618_070 Hb_006618_070 Hb_000010_130--Hb_006618_070 Hb_005038_030 Hb_005038_030 Hb_001352_080--Hb_005038_030 Hb_001907_070 Hb_001907_070 Hb_001352_080--Hb_001907_070 Hb_001352_080--Hb_002498_170 Hb_001352_080--Hb_001959_240 Hb_006911_070 Hb_006911_070 Hb_001352_080--Hb_006911_070 Hb_006846_160 Hb_006846_160 Hb_001352_080--Hb_006846_160 Hb_000300_710 Hb_000300_710 Hb_000424_070--Hb_000300_710 Hb_029622_030 Hb_029622_030 Hb_000424_070--Hb_029622_030 Hb_000211_040 Hb_000211_040 Hb_000424_070--Hb_000211_040 Hb_000424_070--Hb_002960_110 Hb_005194_040 Hb_005194_040 Hb_000424_070--Hb_005194_040 Hb_074792_010 Hb_074792_010 Hb_002960_110--Hb_074792_010 Hb_000189_390 Hb_000189_390 Hb_002960_110--Hb_000189_390 Hb_003529_180 Hb_003529_180 Hb_002960_110--Hb_003529_180 Hb_002960_110--Hb_000300_710 Hb_000638_260 Hb_000638_260 Hb_002960_110--Hb_000638_260 Hb_015531_030 Hb_015531_030 Hb_001959_240--Hb_015531_030 Hb_001959_240--Hb_006911_070 Hb_031042_060 Hb_031042_060 Hb_001959_240--Hb_031042_060 Hb_001959_240--Hb_006618_070 Hb_001454_150 Hb_001454_150 Hb_001959_240--Hb_001454_150 Hb_001959_240--Hb_002498_170 Hb_000340_410 Hb_000340_410 Hb_002498_170--Hb_000340_410 Hb_002498_170--Hb_006846_160 Hb_006252_030 Hb_006252_030 Hb_002498_170--Hb_006252_030 Hb_004052_070 Hb_004052_070 Hb_002498_170--Hb_004052_070 Hb_002498_170--Hb_006618_070 Hb_000322_040 Hb_000322_040 Hb_002498_170--Hb_000322_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60823 1.96575 19.521 1.93072 8.90727 3.97639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.373338 0.929664 0.889891 1.26494 8.59565

CAGE analysis