Hb_099046_010

Information

Type -
Description -
Location Contig99046: 702-1641
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_011023525.1
description PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_099046_010 0.0 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
2 Hb_170487_010 0.1432935504 - - -
3 Hb_000056_230 0.1777580981 transcription factor TF Family: TCP hypothetical protein JCGZ_15588 [Jatropha curcas]
4 Hb_000317_330 0.19144802 - - PREDICTED: RNA-binding protein 38-like [Jatropha curcas]
5 Hb_004662_010 0.2018747728 - - Nascent polypeptide-associated complex subunit beta [Medicago truncatula]
6 Hb_002253_040 0.2035011789 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
7 Hb_001565_100 0.205917462 - - unnamed protein product [Coffea canephora]
8 Hb_000261_180 0.2067581659 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
9 Hb_001052_040 0.2097815774 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
10 Hb_004109_060 0.211707756 - - hypothetical protein POPTR_0019s12520g [Populus trichocarpa]
11 Hb_173178_020 0.2130239822 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
12 Hb_000186_040 0.2148676021 - - conserved hypothetical protein [Ricinus communis]
13 Hb_026447_030 0.2158315539 - - hypothetical protein POPTR_0006s06500g [Populus trichocarpa]
14 Hb_001128_060 0.216313866 - - amino acid permease, putative [Ricinus communis]
15 Hb_001825_010 0.2163225403 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
16 Hb_000886_060 0.2167216671 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
17 Hb_000077_080 0.2173079373 - - PREDICTED: uncharacterized protein LOC105646929 [Jatropha curcas]
18 Hb_000173_380 0.2184447709 transcription factor TF Family: FAR1 -
19 Hb_002248_140 0.21863732 - - acetylglucosaminyltransferase, putative [Ricinus communis]
20 Hb_054885_010 0.2214069875 - - -

Gene co-expression network

sample Hb_099046_010 Hb_099046_010 Hb_170487_010 Hb_170487_010 Hb_099046_010--Hb_170487_010 Hb_000056_230 Hb_000056_230 Hb_099046_010--Hb_000056_230 Hb_000317_330 Hb_000317_330 Hb_099046_010--Hb_000317_330 Hb_004662_010 Hb_004662_010 Hb_099046_010--Hb_004662_010 Hb_002253_040 Hb_002253_040 Hb_099046_010--Hb_002253_040 Hb_001565_100 Hb_001565_100 Hb_099046_010--Hb_001565_100 Hb_001052_040 Hb_001052_040 Hb_170487_010--Hb_001052_040 Hb_015354_010 Hb_015354_010 Hb_170487_010--Hb_015354_010 Hb_000886_060 Hb_000886_060 Hb_170487_010--Hb_000886_060 Hb_173178_020 Hb_173178_020 Hb_170487_010--Hb_173178_020 Hb_000152_670 Hb_000152_670 Hb_170487_010--Hb_000152_670 Hb_128496_010 Hb_128496_010 Hb_000056_230--Hb_128496_010 Hb_000329_420 Hb_000329_420 Hb_000056_230--Hb_000329_420 Hb_004218_070 Hb_004218_070 Hb_000056_230--Hb_004218_070 Hb_000056_230--Hb_004662_010 Hb_008406_140 Hb_008406_140 Hb_000056_230--Hb_008406_140 Hb_000373_270 Hb_000373_270 Hb_000317_330--Hb_000373_270 Hb_001341_030 Hb_001341_030 Hb_000317_330--Hb_001341_030 Hb_000920_040 Hb_000920_040 Hb_000317_330--Hb_000920_040 Hb_000078_180 Hb_000078_180 Hb_000317_330--Hb_000078_180 Hb_004218_150 Hb_004218_150 Hb_000317_330--Hb_004218_150 Hb_000032_620 Hb_000032_620 Hb_000317_330--Hb_000032_620 Hb_181320_010 Hb_181320_010 Hb_004662_010--Hb_181320_010 Hb_004241_040 Hb_004241_040 Hb_004662_010--Hb_004241_040 Hb_144898_010 Hb_144898_010 Hb_004662_010--Hb_144898_010 Hb_012305_040 Hb_012305_040 Hb_004662_010--Hb_012305_040 Hb_175612_010 Hb_175612_010 Hb_004662_010--Hb_175612_010 Hb_005217_020 Hb_005217_020 Hb_004662_010--Hb_005217_020 Hb_004109_060 Hb_004109_060 Hb_002253_040--Hb_004109_060 Hb_001818_080 Hb_001818_080 Hb_002253_040--Hb_001818_080 Hb_001158_220 Hb_001158_220 Hb_002253_040--Hb_001158_220 Hb_031091_010 Hb_031091_010 Hb_002253_040--Hb_031091_010 Hb_007643_050 Hb_007643_050 Hb_002253_040--Hb_007643_050 Hb_000116_110 Hb_000116_110 Hb_002253_040--Hb_000116_110 Hb_002078_430 Hb_002078_430 Hb_001565_100--Hb_002078_430 Hb_011609_030 Hb_011609_030 Hb_001565_100--Hb_011609_030 Hb_000714_020 Hb_000714_020 Hb_001565_100--Hb_000714_020 Hb_074683_020 Hb_074683_020 Hb_001565_100--Hb_074683_020 Hb_003849_080 Hb_003849_080 Hb_001565_100--Hb_003849_080 Hb_000038_130 Hb_000038_130 Hb_001565_100--Hb_000038_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.69796 2.77289 0.294844 3.17856 2.43696 5.52953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.56186 2.45547 0.967914 0.30597 0

CAGE analysis