Hb_128496_010

Information

Type -
Description -
Location Contig128496: 2-1135
Sequence    

Annotation

kegg
ID cic:CICLE_v10018832mg
description hypothetical protein
nr
ID CBI31011.3
description unnamed protein product [Vitis vinifera]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID V4T5Y7
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018832mg PE=4 SV=1
Gene Ontology
ID GO:0016740
description leucine-rich repeat protein kinase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128496_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000056_230 0.1478700068 transcription factor TF Family: TCP hypothetical protein JCGZ_15588 [Jatropha curcas]
3 Hb_001916_120 0.1831110013 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
4 Hb_000365_260 0.1838465246 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000329_420 0.1849152567 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
6 Hb_003598_040 0.197554904 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
7 Hb_000258_150 0.2034794801 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]
8 Hb_002235_130 0.2086715541 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001138_010 0.2134344698 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_000252_090 0.2229687059 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
11 Hb_095471_010 0.2283060978 - - PREDICTED: putative sodium-coupled neutral amino acid transporter 7 [Jatropha curcas]
12 Hb_018954_020 0.2358744626 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Jatropha curcas]
13 Hb_001677_050 0.2383650455 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
14 Hb_004324_240 0.239139644 - - tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]
15 Hb_142751_010 0.2398672416 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012390_010 0.2401274676 - - pectate lyase 1 [Hevea brasiliensis]
17 Hb_008406_140 0.2407340998 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
18 Hb_026447_030 0.2409110753 - - hypothetical protein POPTR_0006s06500g [Populus trichocarpa]
19 Hb_054885_010 0.2449888744 - - -
20 Hb_000605_010 0.2450692532 - - hypothetical protein JCGZ_05865 [Jatropha curcas]

Gene co-expression network

sample Hb_128496_010 Hb_128496_010 Hb_000056_230 Hb_000056_230 Hb_128496_010--Hb_000056_230 Hb_001916_120 Hb_001916_120 Hb_128496_010--Hb_001916_120 Hb_000365_260 Hb_000365_260 Hb_128496_010--Hb_000365_260 Hb_000329_420 Hb_000329_420 Hb_128496_010--Hb_000329_420 Hb_003598_040 Hb_003598_040 Hb_128496_010--Hb_003598_040 Hb_000258_150 Hb_000258_150 Hb_128496_010--Hb_000258_150 Hb_000056_230--Hb_000329_420 Hb_004218_070 Hb_004218_070 Hb_000056_230--Hb_004218_070 Hb_099046_010 Hb_099046_010 Hb_000056_230--Hb_099046_010 Hb_004662_010 Hb_004662_010 Hb_000056_230--Hb_004662_010 Hb_008406_140 Hb_008406_140 Hb_000056_230--Hb_008406_140 Hb_001138_010 Hb_001138_010 Hb_001916_120--Hb_001138_010 Hb_000252_090 Hb_000252_090 Hb_001916_120--Hb_000252_090 Hb_001277_410 Hb_001277_410 Hb_001916_120--Hb_001277_410 Hb_001916_120--Hb_000365_260 Hb_004324_240 Hb_004324_240 Hb_001916_120--Hb_004324_240 Hb_018954_020 Hb_018954_020 Hb_001916_120--Hb_018954_020 Hb_162286_020 Hb_162286_020 Hb_000365_260--Hb_162286_020 Hb_000179_200 Hb_000179_200 Hb_000365_260--Hb_000179_200 Hb_001268_210 Hb_001268_210 Hb_000365_260--Hb_001268_210 Hb_002027_220 Hb_002027_220 Hb_000365_260--Hb_002027_220 Hb_000465_120 Hb_000465_120 Hb_000365_260--Hb_000465_120 Hb_000215_260 Hb_000215_260 Hb_000329_420--Hb_000215_260 Hb_000329_420--Hb_001916_120 Hb_000056_120 Hb_000056_120 Hb_000329_420--Hb_000056_120 Hb_000329_420--Hb_000252_090 Hb_002265_030 Hb_002265_030 Hb_000329_420--Hb_002265_030 Hb_035318_010 Hb_035318_010 Hb_003598_040--Hb_035318_010 Hb_001488_340 Hb_001488_340 Hb_003598_040--Hb_001488_340 Hb_003297_010 Hb_003297_010 Hb_003598_040--Hb_003297_010 Hb_001218_050 Hb_001218_050 Hb_003598_040--Hb_001218_050 Hb_003064_030 Hb_003064_030 Hb_003598_040--Hb_003064_030 Hb_141532_010 Hb_141532_010 Hb_003598_040--Hb_141532_010 Hb_010560_060 Hb_010560_060 Hb_000258_150--Hb_010560_060 Hb_022174_010 Hb_022174_010 Hb_000258_150--Hb_022174_010 Hb_003654_010 Hb_003654_010 Hb_000258_150--Hb_003654_010 Hb_000258_150--Hb_000365_260 Hb_004007_160 Hb_004007_160 Hb_000258_150--Hb_004007_160 Hb_000098_020 Hb_000098_020 Hb_000258_150--Hb_000098_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.85668 0.0925425 0.213751 0.720904 0.572332 0.957396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0791734 0.311215 0.111258 0.0759239 0.123337

CAGE analysis