Hb_170487_010

Information

Type -
Description -
Location Contig170487: 6418-7363
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170487_010 0.0 - - -
2 Hb_001052_040 0.1187275653 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
3 Hb_015354_010 0.1397050076 - - PREDICTED: B2 protein [Jatropha curcas]
4 Hb_099046_010 0.1432935504 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
5 Hb_000886_060 0.1517331592 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
6 Hb_173178_020 0.1531484479 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
7 Hb_000152_670 0.1537537748 - - hypothetical protein VITISV_037603 [Vitis vinifera]
8 Hb_172141_010 0.1545779956 - - PREDICTED: uncharacterized protein LOC105641033 [Jatropha curcas]
9 Hb_003995_010 0.1584562858 - - -
10 Hb_000317_330 0.1596208011 - - PREDICTED: RNA-binding protein 38-like [Jatropha curcas]
11 Hb_001218_050 0.1617816009 - - Ribosome-binding protein, putative [Ricinus communis]
12 Hb_003106_150 0.1666833749 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
13 Hb_128376_010 0.1685035444 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_035318_010 0.169270037 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
15 Hb_004109_060 0.1696309093 - - hypothetical protein POPTR_0019s12520g [Populus trichocarpa]
16 Hb_002253_040 0.176341193 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
17 Hb_001493_010 0.1790841203 - - triacylglycerol acidic lipase TAL4 [Ricinus communis]
18 Hb_003477_010 0.1809921913 - - hypothetical protein JCGZ_21107 [Jatropha curcas]
19 Hb_000787_170 0.1811244717 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
20 Hb_000521_020 0.182662367 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]

Gene co-expression network

sample Hb_170487_010 Hb_170487_010 Hb_001052_040 Hb_001052_040 Hb_170487_010--Hb_001052_040 Hb_015354_010 Hb_015354_010 Hb_170487_010--Hb_015354_010 Hb_099046_010 Hb_099046_010 Hb_170487_010--Hb_099046_010 Hb_000886_060 Hb_000886_060 Hb_170487_010--Hb_000886_060 Hb_173178_020 Hb_173178_020 Hb_170487_010--Hb_173178_020 Hb_000152_670 Hb_000152_670 Hb_170487_010--Hb_000152_670 Hb_001052_040--Hb_015354_010 Hb_001052_040--Hb_000886_060 Hb_001052_040--Hb_000152_670 Hb_002742_080 Hb_002742_080 Hb_001052_040--Hb_002742_080 Hb_001910_020 Hb_001910_020 Hb_001052_040--Hb_001910_020 Hb_001052_040--Hb_173178_020 Hb_003038_220 Hb_003038_220 Hb_015354_010--Hb_003038_220 Hb_015354_010--Hb_173178_020 Hb_015354_010--Hb_000152_670 Hb_142751_010 Hb_142751_010 Hb_015354_010--Hb_142751_010 Hb_015354_010--Hb_002742_080 Hb_000056_230 Hb_000056_230 Hb_099046_010--Hb_000056_230 Hb_000317_330 Hb_000317_330 Hb_099046_010--Hb_000317_330 Hb_004662_010 Hb_004662_010 Hb_099046_010--Hb_004662_010 Hb_002253_040 Hb_002253_040 Hb_099046_010--Hb_002253_040 Hb_001565_100 Hb_001565_100 Hb_099046_010--Hb_001565_100 Hb_073973_160 Hb_073973_160 Hb_000886_060--Hb_073973_160 Hb_010584_010 Hb_010584_010 Hb_000886_060--Hb_010584_010 Hb_002002_030 Hb_002002_030 Hb_000886_060--Hb_002002_030 Hb_000331_160 Hb_000331_160 Hb_000886_060--Hb_000331_160 Hb_000261_290 Hb_000261_290 Hb_000886_060--Hb_000261_290 Hb_001616_090 Hb_001616_090 Hb_173178_020--Hb_001616_090 Hb_031091_010 Hb_031091_010 Hb_173178_020--Hb_031091_010 Hb_003716_020 Hb_003716_020 Hb_173178_020--Hb_003716_020 Hb_000352_090 Hb_000352_090 Hb_173178_020--Hb_000352_090 Hb_009411_020 Hb_009411_020 Hb_173178_020--Hb_009411_020 Hb_008714_020 Hb_008714_020 Hb_173178_020--Hb_008714_020 Hb_128376_010 Hb_128376_010 Hb_000152_670--Hb_128376_010 Hb_000996_180 Hb_000996_180 Hb_000152_670--Hb_000996_180 Hb_004017_040 Hb_004017_040 Hb_000152_670--Hb_004017_040 Hb_009646_050 Hb_009646_050 Hb_000152_670--Hb_009646_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.1825 17.9499 5.03557 12.043 11.5426 28.4559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.03146 8.62487 2.46572 5.19673 0.446463

CAGE analysis