Hb_000012_150

Information

Type -
Description -
Location Contig12: 261678-266364
Sequence    

Annotation

kegg
ID rcu:RCOM_0798420
description Vacuolar-processing enzyme precursor, putative (EC:3.4.22.34)
nr
ID XP_012077326.1
description PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
swissprot
ID P49043
description Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1
trembl
ID A0A067KPB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07696 PE=4 SV=1
Gene Ontology
ID GO:0008233
description vacuolar-processing enzyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05993: 261622-266348 , PASA_asmbl_05994: 265368-265670
cDNA
(Sanger)
(ID:Location)		 050_F04.ab1: 264256-266332

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_150 0.0 - - PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
2 Hb_001439_180 0.10671588 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
3 Hb_002025_140 0.1076647368 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
4 Hb_042083_070 0.1096089455 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
5 Hb_063716_010 0.1114722695 - - phopholipase d alpha, putative [Ricinus communis]
6 Hb_000573_040 0.1119411961 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
7 Hb_005725_070 0.112727014 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000165_130 0.112990803 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
9 Hb_001408_090 0.1145994218 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
10 Hb_000331_480 0.1152774092 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
11 Hb_002493_090 0.1170261287 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
12 Hb_000367_290 0.1179823657 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
13 Hb_001034_020 0.11943128 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
14 Hb_000631_150 0.1196208495 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
15 Hb_000849_100 0.1197728528 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
16 Hb_010866_040 0.1220441145 - - PREDICTED: metal transporter Nramp2-like [Jatropha curcas]
17 Hb_003216_110 0.1225433873 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
18 Hb_001975_020 0.1254098846 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
19 Hb_000640_210 0.1267290656 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
20 Hb_000134_360 0.1269090924 - - PREDICTED: protein gar2 [Jatropha curcas]

Gene co-expression network

sample Hb_000012_150 Hb_000012_150 Hb_001439_180 Hb_001439_180 Hb_000012_150--Hb_001439_180 Hb_002025_140 Hb_002025_140 Hb_000012_150--Hb_002025_140 Hb_042083_070 Hb_042083_070 Hb_000012_150--Hb_042083_070 Hb_063716_010 Hb_063716_010 Hb_000012_150--Hb_063716_010 Hb_000573_040 Hb_000573_040 Hb_000012_150--Hb_000573_040 Hb_005725_070 Hb_005725_070 Hb_000012_150--Hb_005725_070 Hb_000076_290 Hb_000076_290 Hb_001439_180--Hb_000076_290 Hb_001034_020 Hb_001034_020 Hb_001439_180--Hb_001034_020 Hb_002675_190 Hb_002675_190 Hb_001439_180--Hb_002675_190 Hb_029281_010 Hb_029281_010 Hb_001439_180--Hb_029281_010 Hb_000331_480 Hb_000331_480 Hb_001439_180--Hb_000331_480 Hb_004931_040 Hb_004931_040 Hb_001439_180--Hb_004931_040 Hb_002025_140--Hb_000573_040 Hb_004531_090 Hb_004531_090 Hb_002025_140--Hb_004531_090 Hb_000165_130 Hb_000165_130 Hb_002025_140--Hb_000165_130 Hb_000173_370 Hb_000173_370 Hb_002025_140--Hb_000173_370 Hb_003216_110 Hb_003216_110 Hb_002025_140--Hb_003216_110 Hb_004032_350 Hb_004032_350 Hb_002025_140--Hb_004032_350 Hb_002725_070 Hb_002725_070 Hb_042083_070--Hb_002725_070 Hb_005295_040 Hb_005295_040 Hb_042083_070--Hb_005295_040 Hb_000462_150 Hb_000462_150 Hb_042083_070--Hb_000462_150 Hb_005914_230 Hb_005914_230 Hb_042083_070--Hb_005914_230 Hb_003384_030 Hb_003384_030 Hb_042083_070--Hb_003384_030 Hb_004310_060 Hb_004310_060 Hb_042083_070--Hb_004310_060 Hb_011282_030 Hb_011282_030 Hb_063716_010--Hb_011282_030 Hb_079326_010 Hb_079326_010 Hb_063716_010--Hb_079326_010 Hb_011644_020 Hb_011644_020 Hb_063716_010--Hb_011644_020 Hb_001846_060 Hb_001846_060 Hb_063716_010--Hb_001846_060 Hb_000497_230 Hb_000497_230 Hb_063716_010--Hb_000497_230 Hb_000684_180 Hb_000684_180 Hb_000573_040--Hb_000684_180 Hb_000134_360 Hb_000134_360 Hb_000573_040--Hb_000134_360 Hb_000212_280 Hb_000212_280 Hb_000573_040--Hb_000212_280 Hb_005028_010 Hb_005028_010 Hb_000573_040--Hb_005028_010 Hb_000573_040--Hb_004531_090 Hb_012977_010 Hb_012977_010 Hb_005725_070--Hb_012977_010 Hb_001498_030 Hb_001498_030 Hb_005725_070--Hb_001498_030 Hb_005725_070--Hb_002025_140 Hb_002818_040 Hb_002818_040 Hb_005725_070--Hb_002818_040 Hb_005314_010 Hb_005314_010 Hb_005725_070--Hb_005314_010 Hb_024399_010 Hb_024399_010 Hb_005725_070--Hb_024399_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1068.29 279.817 53.9043 243.568 897.188 758.558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
404.777 83.8455 357.62 210.348 76.3914

CAGE analysis