Hb_004635_080

Information

Type -
Description -
Location Contig4635: 51481-62809
Sequence    

Annotation

kegg
ID rcu:RCOM_0292850
description abc transporter, putative (EC:3.6.3.44)
nr
ID AIU41636.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9LZB8
description ABC transporter B family member 29, chloroplastic OS=Arabidopsis thaliana GN=ABCB29 PE=2 SV=1
trembl
ID A0A097P9R7
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCB29 PE=2 SV=1
Gene Ontology
ID GO:0009941
description abc transporter b family member chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43886: 51684-51846 , PASA_asmbl_43887: 62034-62186 , PASA_asmbl_43888: 60229-62384 , PASA_asmbl_43889: 62394-62684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004635_080 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_000422_140 0.1002430934 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
3 Hb_028707_090 0.1161726099 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
4 Hb_000365_140 0.1181467017 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
5 Hb_028390_010 0.1187808312 - - PREDICTED: filament-like plant protein 3 [Populus euphratica]
6 Hb_008595_010 0.1198592637 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
7 Hb_002477_130 0.1231356531 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005527_030 0.1239960448 - - PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Jatropha curcas]
9 Hb_001300_070 0.125053459 - - OTU domain-containing protein 6B, putative [Ricinus communis]
10 Hb_007943_100 0.1256595461 - - unnamed protein product [Coffea canephora]
11 Hb_000116_180 0.1258050459 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
12 Hb_028900_010 0.1263831245 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
13 Hb_000982_160 0.1286886601 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
14 Hb_000866_470 0.1289752889 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
15 Hb_002527_030 0.1299799933 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]
16 Hb_000037_110 0.1305276086 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
17 Hb_005895_040 0.130949667 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
18 Hb_000946_120 0.1324610751 - - DNA binding protein, putative [Ricinus communis]
19 Hb_001584_290 0.1338762585 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
20 Hb_000107_400 0.1341621296 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Jatropha curcas]

Gene co-expression network

sample Hb_004635_080 Hb_004635_080 Hb_000422_140 Hb_000422_140 Hb_004635_080--Hb_000422_140 Hb_028707_090 Hb_028707_090 Hb_004635_080--Hb_028707_090 Hb_000365_140 Hb_000365_140 Hb_004635_080--Hb_000365_140 Hb_028390_010 Hb_028390_010 Hb_004635_080--Hb_028390_010 Hb_008595_010 Hb_008595_010 Hb_004635_080--Hb_008595_010 Hb_002477_130 Hb_002477_130 Hb_004635_080--Hb_002477_130 Hb_005895_040 Hb_005895_040 Hb_000422_140--Hb_005895_040 Hb_144787_030 Hb_144787_030 Hb_000422_140--Hb_144787_030 Hb_004656_060 Hb_004656_060 Hb_000422_140--Hb_004656_060 Hb_000946_120 Hb_000946_120 Hb_000422_140--Hb_000946_120 Hb_000422_140--Hb_000365_140 Hb_000422_140--Hb_002477_130 Hb_000104_080 Hb_000104_080 Hb_028707_090--Hb_000104_080 Hb_000640_020 Hb_000640_020 Hb_028707_090--Hb_000640_020 Hb_028707_090--Hb_002477_130 Hb_000640_220 Hb_000640_220 Hb_028707_090--Hb_000640_220 Hb_008518_050 Hb_008518_050 Hb_028707_090--Hb_008518_050 Hb_008143_030 Hb_008143_030 Hb_028707_090--Hb_008143_030 Hb_000365_140--Hb_002477_130 Hb_000365_140--Hb_000946_120 Hb_000032_490 Hb_000032_490 Hb_000365_140--Hb_000032_490 Hb_000365_140--Hb_000640_220 Hb_000365_140--Hb_005895_040 Hb_007044_080 Hb_007044_080 Hb_028390_010--Hb_007044_080 Hb_000982_160 Hb_000982_160 Hb_028390_010--Hb_000982_160 Hb_002527_030 Hb_002527_030 Hb_028390_010--Hb_002527_030 Hb_001689_020 Hb_001689_020 Hb_028390_010--Hb_001689_020 Hb_000933_090 Hb_000933_090 Hb_028390_010--Hb_000933_090 Hb_000645_050 Hb_000645_050 Hb_028390_010--Hb_000645_050 Hb_001300_070 Hb_001300_070 Hb_008595_010--Hb_001300_070 Hb_000768_190 Hb_000768_190 Hb_008595_010--Hb_000768_190 Hb_000059_150 Hb_000059_150 Hb_008595_010--Hb_000059_150 Hb_002587_020 Hb_002587_020 Hb_008595_010--Hb_002587_020 Hb_010381_060 Hb_010381_060 Hb_008595_010--Hb_010381_060 Hb_000037_110 Hb_000037_110 Hb_008595_010--Hb_000037_110 Hb_000424_010 Hb_000424_010 Hb_002477_130--Hb_000424_010 Hb_002477_130--Hb_005895_040 Hb_002477_130--Hb_000640_220 Hb_000358_250 Hb_000358_250 Hb_002477_130--Hb_000358_250 Hb_001771_120 Hb_001771_120 Hb_002477_130--Hb_001771_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8598 7.4181 5.51596 6.68996 30.3183 16.5202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.75128 8.32018 5.58365 3.16266 12.5825

CAGE analysis