Hb_000031_170

Information

Type -
Description -
Location Contig31: 122887-135197
Sequence    

Annotation

kegg
ID pop:POPTR_0018s03440g
description POPTRDRAFT_261631; hypothetical protein
nr
ID XP_012076352.1
description PREDICTED: abnormal long morphology protein 1 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9ILE3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s03440g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32784: 122869-124947 , PASA_asmbl_32785: 125463-126014 , PASA_asmbl_32786: 127022-127317 , PASA_asmbl_32787: 127689-128394 , PASA_asmbl_32788: 129896-132983
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_170 0.0 - - PREDICTED: abnormal long morphology protein 1 isoform X1 [Jatropha curcas]
2 Hb_007416_160 0.0754112755 - - PREDICTED: centromere-associated protein E isoform X1 [Nelumbo nucifera]
3 Hb_005486_030 0.0830826579 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
4 Hb_001205_230 0.0874933161 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
5 Hb_000046_190 0.0907318982 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
6 Hb_000574_400 0.091242906 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
7 Hb_000318_390 0.0917343935 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
8 Hb_009898_010 0.0919864762 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
9 Hb_003203_030 0.0996244041 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
10 Hb_002233_100 0.0997836214 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Malus domestica]
11 Hb_000041_090 0.1019003165 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
12 Hb_009767_080 0.1022025204 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
13 Hb_000803_260 0.1023005215 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
14 Hb_027346_010 0.1032190748 - - -
15 Hb_000672_040 0.1042264832 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
16 Hb_006816_430 0.1048972141 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
17 Hb_004117_140 0.1049735966 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial [Populus euphratica]
18 Hb_003440_050 0.1055887124 - - hypothetical protein JCGZ_05806 [Jatropha curcas]
19 Hb_000540_060 0.1060352219 - - PREDICTED: uncharacterized protein LOC105628177 [Jatropha curcas]
20 Hb_000796_040 0.1063808167 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000031_170 Hb_000031_170 Hb_007416_160 Hb_007416_160 Hb_000031_170--Hb_007416_160 Hb_005486_030 Hb_005486_030 Hb_000031_170--Hb_005486_030 Hb_001205_230 Hb_001205_230 Hb_000031_170--Hb_001205_230 Hb_000046_190 Hb_000046_190 Hb_000031_170--Hb_000046_190 Hb_000574_400 Hb_000574_400 Hb_000031_170--Hb_000574_400 Hb_000318_390 Hb_000318_390 Hb_000031_170--Hb_000318_390 Hb_000796_040 Hb_000796_040 Hb_007416_160--Hb_000796_040 Hb_012799_030 Hb_012799_030 Hb_007416_160--Hb_012799_030 Hb_007416_160--Hb_001205_230 Hb_000034_040 Hb_000034_040 Hb_007416_160--Hb_000034_040 Hb_003440_050 Hb_003440_050 Hb_007416_160--Hb_003440_050 Hb_000130_490 Hb_000130_490 Hb_005486_030--Hb_000130_490 Hb_000672_040 Hb_000672_040 Hb_005486_030--Hb_000672_040 Hb_002316_160 Hb_002316_160 Hb_005486_030--Hb_002316_160 Hb_009767_080 Hb_009767_080 Hb_005486_030--Hb_009767_080 Hb_009898_010 Hb_009898_010 Hb_005486_030--Hb_009898_010 Hb_008053_040 Hb_008053_040 Hb_005486_030--Hb_008053_040 Hb_027346_010 Hb_027346_010 Hb_001205_230--Hb_027346_010 Hb_001004_060 Hb_001004_060 Hb_001205_230--Hb_001004_060 Hb_000281_090 Hb_000281_090 Hb_001205_230--Hb_000281_090 Hb_001205_230--Hb_009767_080 Hb_009486_060 Hb_009486_060 Hb_001205_230--Hb_009486_060 Hb_000035_290 Hb_000035_290 Hb_001205_230--Hb_000035_290 Hb_002909_120 Hb_002909_120 Hb_000046_190--Hb_002909_120 Hb_000046_190--Hb_009767_080 Hb_003119_080 Hb_003119_080 Hb_000046_190--Hb_003119_080 Hb_019430_020 Hb_019430_020 Hb_000046_190--Hb_019430_020 Hb_005488_170 Hb_005488_170 Hb_000046_190--Hb_005488_170 Hb_005348_010 Hb_005348_010 Hb_000046_190--Hb_005348_010 Hb_002234_170 Hb_002234_170 Hb_000574_400--Hb_002234_170 Hb_002783_040 Hb_002783_040 Hb_000574_400--Hb_002783_040 Hb_000574_400--Hb_009486_060 Hb_000574_400--Hb_027346_010 Hb_000574_400--Hb_001205_230 Hb_011671_410 Hb_011671_410 Hb_000574_400--Hb_011671_410 Hb_014267_010 Hb_014267_010 Hb_000318_390--Hb_014267_010 Hb_012656_030 Hb_012656_030 Hb_000318_390--Hb_012656_030 Hb_000890_050 Hb_000890_050 Hb_000318_390--Hb_000890_050 Hb_000803_260 Hb_000803_260 Hb_000318_390--Hb_000803_260 Hb_000318_390--Hb_001205_230 Hb_000318_390--Hb_003440_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.56058 5.43402 1.14229 3.03811 4.81034 4.94666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.45694 2.60579 4.30742 2.48364 7.18385

CAGE analysis