Hb_003053_050

Information

Type -
Description -
Location Contig3053: 60888-68943
Sequence    

Annotation

kegg
ID cit:102615375
description putative phospholipid-transporting ATPase 8-like
nr
ID XP_012081472.1
description PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
swissprot
ID Q9LK90
description Putative phospholipid-transporting ATPase 8 OS=Arabidopsis thaliana GN=ALA8 PE=3 SV=1
trembl
ID A0A067LKV1
description Phospholipid-transporting ATPase OS=Jatropha curcas GN=JCGZ_09584 PE=3 SV=1
Gene Ontology
ID GO:0016021
description phospholipid-transporting atpase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32211: 60905-67655 , PASA_asmbl_32212: 65719-68861 , PASA_asmbl_32213: 65682-68284
cDNA
(Sanger)
(ID:Location)		 010_G17.ab1: 60905-61442

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003053_050 0.0 - - PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
2 Hb_000031_230 0.0897243284 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
3 Hb_010344_030 0.1121917336 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000815_230 0.1129403349 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000997_100 0.1301817644 - - PREDICTED: uncharacterized protein LOC105632094 isoform X2 [Jatropha curcas]
6 Hb_002053_050 0.1338692821 - - Kinesin heavy chain, putative [Ricinus communis]
7 Hb_000336_200 0.1377452002 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
8 Hb_000261_400 0.1392672992 - - hypothetical protein JCGZ_01125 [Jatropha curcas]
9 Hb_000922_060 0.142154824 - - kinesin light chain, putative [Ricinus communis]
10 Hb_000505_080 0.1431367686 - - Inner membrane transport protein yjjL, putative [Ricinus communis]
11 Hb_003682_070 0.1452162159 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
12 Hb_001396_240 0.1453525382 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
13 Hb_004994_350 0.1474861858 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
14 Hb_000934_110 0.1484237143 - - PREDICTED: protein trichome berefringence-like 7 [Jatropha curcas]
15 Hb_000107_250 0.1485663928 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
16 Hb_004097_090 0.1492417077 - - PREDICTED: uncharacterized protein LOC105634517 [Jatropha curcas]
17 Hb_004735_020 0.1499412401 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
18 Hb_001421_090 0.1508704278 - - hypothetical protein RCOM_1278080 [Ricinus communis]
19 Hb_006916_030 0.1511550795 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
20 Hb_003462_060 0.1516945912 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]

Gene co-expression network

sample Hb_003053_050 Hb_003053_050 Hb_000031_230 Hb_000031_230 Hb_003053_050--Hb_000031_230 Hb_010344_030 Hb_010344_030 Hb_003053_050--Hb_010344_030 Hb_000815_230 Hb_000815_230 Hb_003053_050--Hb_000815_230 Hb_000997_100 Hb_000997_100 Hb_003053_050--Hb_000997_100 Hb_002053_050 Hb_002053_050 Hb_003053_050--Hb_002053_050 Hb_000336_200 Hb_000336_200 Hb_003053_050--Hb_000336_200 Hb_000031_230--Hb_000997_100 Hb_007192_090 Hb_007192_090 Hb_000031_230--Hb_007192_090 Hb_008092_060 Hb_008092_060 Hb_000031_230--Hb_008092_060 Hb_001250_020 Hb_001250_020 Hb_000031_230--Hb_001250_020 Hb_001408_030 Hb_001408_030 Hb_000031_230--Hb_001408_030 Hb_006006_060 Hb_006006_060 Hb_010344_030--Hb_006006_060 Hb_005250_010 Hb_005250_010 Hb_010344_030--Hb_005250_010 Hb_000200_350 Hb_000200_350 Hb_010344_030--Hb_000200_350 Hb_000388_150 Hb_000388_150 Hb_010344_030--Hb_000388_150 Hb_004735_020 Hb_004735_020 Hb_010344_030--Hb_004735_020 Hb_003462_060 Hb_003462_060 Hb_010344_030--Hb_003462_060 Hb_000505_080 Hb_000505_080 Hb_000815_230--Hb_000505_080 Hb_000815_230--Hb_002053_050 Hb_003682_070 Hb_003682_070 Hb_000815_230--Hb_003682_070 Hb_000000_310 Hb_000000_310 Hb_000815_230--Hb_000000_310 Hb_000815_230--Hb_010344_030 Hb_000815_230--Hb_004735_020 Hb_000529_130 Hb_000529_130 Hb_000997_100--Hb_000529_130 Hb_006422_020 Hb_006422_020 Hb_000997_100--Hb_006422_020 Hb_003734_080 Hb_003734_080 Hb_000997_100--Hb_003734_080 Hb_003849_160 Hb_003849_160 Hb_000997_100--Hb_003849_160 Hb_004994_350 Hb_004994_350 Hb_000997_100--Hb_004994_350 Hb_005062_060 Hb_005062_060 Hb_002053_050--Hb_005062_060 Hb_000107_250 Hb_000107_250 Hb_002053_050--Hb_000107_250 Hb_005656_070 Hb_005656_070 Hb_002053_050--Hb_005656_070 Hb_022693_130 Hb_022693_130 Hb_002053_050--Hb_022693_130 Hb_073973_120 Hb_073973_120 Hb_002053_050--Hb_073973_120 Hb_000665_270 Hb_000665_270 Hb_000336_200--Hb_000665_270 Hb_001269_500 Hb_001269_500 Hb_000336_200--Hb_001269_500 Hb_001649_030 Hb_001649_030 Hb_000336_200--Hb_001649_030 Hb_000465_440 Hb_000465_440 Hb_000336_200--Hb_000465_440 Hb_000358_040 Hb_000358_040 Hb_000336_200--Hb_000358_040 Hb_009288_040 Hb_009288_040 Hb_000336_200--Hb_009288_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.34932 12.6181 13.4059 19.3069 6.29085 14.651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.30192 2.76645 3.39838 3.33434 33.991

CAGE analysis