Hb_159809_060

Information

Type -
Description -
Location Contig159809: 70609-79128
Sequence    

Annotation

kegg
ID pop:POPTR_0009s11540g
description POPTRDRAFT_821204; hypothetical protein
nr
ID XP_012069535.1
description PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
swissprot
ID Q9LHN4
description Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 OS=Arabidopsis thaliana GN=LPAT5 PE=2 SV=1
trembl
ID B2LWM5
description 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Ricinus communis GN=LPAAT5 PE=2 SV=1
Gene Ontology
ID GO:0003841
description probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14250: 75556-75793
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159809_060 0.0 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
2 Hb_028487_070 0.086406529 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002639_040 0.0966499273 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
4 Hb_000363_290 0.1007954689 - - fimbrin, putative [Ricinus communis]
5 Hb_001347_060 0.1036929616 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
6 Hb_000645_280 0.1049808338 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
7 Hb_001269_600 0.1067033842 - - protein phosphatase 2c, putative [Ricinus communis]
8 Hb_000406_210 0.106711153 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
9 Hb_074197_040 0.1074139778 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
10 Hb_008705_020 0.1113249924 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
11 Hb_000128_060 0.1124733876 - - PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis vinifera]
12 Hb_004994_020 0.1126272996 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
13 Hb_000815_300 0.1159928427 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
14 Hb_001141_240 0.1175644578 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
15 Hb_000358_020 0.117603256 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
16 Hb_003086_170 0.1192065574 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
17 Hb_002025_250 0.1199038382 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Jatropha curcas]
18 Hb_000803_320 0.1210255913 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
19 Hb_028487_160 0.1214306407 - - clathrin assembly protein, putative [Ricinus communis]
20 Hb_000367_180 0.1225192606 - - Heparanase-2, putative [Ricinus communis]

Gene co-expression network

sample Hb_159809_060 Hb_159809_060 Hb_028487_070 Hb_028487_070 Hb_159809_060--Hb_028487_070 Hb_002639_040 Hb_002639_040 Hb_159809_060--Hb_002639_040 Hb_000363_290 Hb_000363_290 Hb_159809_060--Hb_000363_290 Hb_001347_060 Hb_001347_060 Hb_159809_060--Hb_001347_060 Hb_000645_280 Hb_000645_280 Hb_159809_060--Hb_000645_280 Hb_001269_600 Hb_001269_600 Hb_159809_060--Hb_001269_600 Hb_028487_070--Hb_000645_280 Hb_002774_190 Hb_002774_190 Hb_028487_070--Hb_002774_190 Hb_000078_140 Hb_000078_140 Hb_028487_070--Hb_000078_140 Hb_000139_080 Hb_000139_080 Hb_028487_070--Hb_000139_080 Hb_000815_300 Hb_000815_300 Hb_028487_070--Hb_000815_300 Hb_001141_240 Hb_001141_240 Hb_028487_070--Hb_001141_240 Hb_000103_290 Hb_000103_290 Hb_002639_040--Hb_000103_290 Hb_027506_010 Hb_027506_010 Hb_002639_040--Hb_027506_010 Hb_002639_040--Hb_000363_290 Hb_011819_020 Hb_011819_020 Hb_002639_040--Hb_011819_020 Hb_000406_210 Hb_000406_210 Hb_002639_040--Hb_000406_210 Hb_000409_050 Hb_000409_050 Hb_002639_040--Hb_000409_050 Hb_002042_050 Hb_002042_050 Hb_000363_290--Hb_002042_050 Hb_001014_070 Hb_001014_070 Hb_000363_290--Hb_001014_070 Hb_000703_190 Hb_000703_190 Hb_000363_290--Hb_000703_190 Hb_000567_230 Hb_000567_230 Hb_000363_290--Hb_000567_230 Hb_001817_170 Hb_001817_170 Hb_000363_290--Hb_001817_170 Hb_000243_260 Hb_000243_260 Hb_000363_290--Hb_000243_260 Hb_000347_430 Hb_000347_430 Hb_001347_060--Hb_000347_430 Hb_008033_040 Hb_008033_040 Hb_001347_060--Hb_008033_040 Hb_004108_160 Hb_004108_160 Hb_001347_060--Hb_004108_160 Hb_001936_090 Hb_001936_090 Hb_001347_060--Hb_001936_090 Hb_000363_310 Hb_000363_310 Hb_001347_060--Hb_000363_310 Hb_000406_200 Hb_000406_200 Hb_001347_060--Hb_000406_200 Hb_000684_210 Hb_000684_210 Hb_000645_280--Hb_000684_210 Hb_002232_390 Hb_002232_390 Hb_000645_280--Hb_002232_390 Hb_001051_050 Hb_001051_050 Hb_000645_280--Hb_001051_050 Hb_000645_280--Hb_001347_060 Hb_005800_030 Hb_005800_030 Hb_000645_280--Hb_005800_030 Hb_001703_050 Hb_001703_050 Hb_001269_600--Hb_001703_050 Hb_003159_050 Hb_003159_050 Hb_001269_600--Hb_003159_050 Hb_001269_600--Hb_000409_050 Hb_001828_180 Hb_001828_180 Hb_001269_600--Hb_001828_180 Hb_004096_110 Hb_004096_110 Hb_001269_600--Hb_004096_110 Hb_000363_190 Hb_000363_190 Hb_001269_600--Hb_000363_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.08339 3.95794 5.88164 7.74674 5.22744 2.09791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.16741 4.19545 3.24473 5.59467 9.45663

CAGE analysis