Hb_002929_100

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2929: 58786-61834
Sequence    

Annotation

kegg
ID rcu:RCOM_1487620
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_012069263.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067L9R0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24838 PE=4 SV=1
Gene Ontology
ID GO:0016787
description cc-nbs-lrr resistance isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002929_100 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_006052_050 0.1622911001 - - hypothetical protein EUGRSUZ_A00568 [Eucalyptus grandis]
3 Hb_017987_080 0.1912750356 - - Uncharacterized protein TCM_001832 [Theobroma cacao]
4 Hb_004324_410 0.2045849839 - - hypothetical protein JCGZ_26025 [Jatropha curcas]
5 Hb_002019_040 0.2145811238 - - hypothetical protein PRUPE_ppb016160mg, partial [Prunus persica]
6 Hb_002232_050 0.2191523381 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
7 Hb_001363_030 0.2201084646 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Populus euphratica]
8 Hb_002995_030 0.2201954059 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004970_130 0.2205447663 - - PREDICTED: uncharacterized protein LOC105633891 [Jatropha curcas]
10 Hb_010962_030 0.225387582 - - kinase, putative [Ricinus communis]
11 Hb_000003_620 0.227113207 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
12 Hb_000815_150 0.2290887507 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
13 Hb_001365_040 0.2306340921 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X2 [Populus euphratica]
14 Hb_002025_370 0.231061597 - - monooxygenase, putative [Ricinus communis]
15 Hb_000333_120 0.2345466755 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
16 Hb_007371_020 0.2378319614 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
17 Hb_001810_010 0.2424154815 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
18 Hb_167020_010 0.2436974944 - - unnamed protein product [Vitis vinifera]
19 Hb_000111_130 0.2438625442 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
20 Hb_000146_110 0.2477931677 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]

Gene co-expression network

sample Hb_002929_100 Hb_002929_100 Hb_006052_050 Hb_006052_050 Hb_002929_100--Hb_006052_050 Hb_017987_080 Hb_017987_080 Hb_002929_100--Hb_017987_080 Hb_004324_410 Hb_004324_410 Hb_002929_100--Hb_004324_410 Hb_002019_040 Hb_002019_040 Hb_002929_100--Hb_002019_040 Hb_002232_050 Hb_002232_050 Hb_002929_100--Hb_002232_050 Hb_001363_030 Hb_001363_030 Hb_002929_100--Hb_001363_030 Hb_000915_220 Hb_000915_220 Hb_006052_050--Hb_000915_220 Hb_007590_040 Hb_007590_040 Hb_006052_050--Hb_007590_040 Hb_002995_030 Hb_002995_030 Hb_006052_050--Hb_002995_030 Hb_030873_010 Hb_030873_010 Hb_006052_050--Hb_030873_010 Hb_000119_050 Hb_000119_050 Hb_006052_050--Hb_000119_050 Hb_001477_120 Hb_001477_120 Hb_017987_080--Hb_001477_120 Hb_169388_010 Hb_169388_010 Hb_017987_080--Hb_169388_010 Hb_017987_080--Hb_002019_040 Hb_017987_080--Hb_004324_410 Hb_001363_010 Hb_001363_010 Hb_017987_080--Hb_001363_010 Hb_004324_410--Hb_001363_030 Hb_004970_130 Hb_004970_130 Hb_004324_410--Hb_004970_130 Hb_001365_040 Hb_001365_040 Hb_004324_410--Hb_001365_040 Hb_000009_260 Hb_000009_260 Hb_004324_410--Hb_000009_260 Hb_002025_370 Hb_002025_370 Hb_004324_410--Hb_002025_370 Hb_001810_010 Hb_001810_010 Hb_004324_410--Hb_001810_010 Hb_002019_040--Hb_002025_370 Hb_002019_040--Hb_001477_120 Hb_004940_090 Hb_004940_090 Hb_002019_040--Hb_004940_090 Hb_067034_010 Hb_067034_010 Hb_002019_040--Hb_067034_010 Hb_006353_010 Hb_006353_010 Hb_002019_040--Hb_006353_010 Hb_000284_060 Hb_000284_060 Hb_002019_040--Hb_000284_060 Hb_002475_130 Hb_002475_130 Hb_002232_050--Hb_002475_130 Hb_001921_010 Hb_001921_010 Hb_002232_050--Hb_001921_010 Hb_001227_040 Hb_001227_040 Hb_002232_050--Hb_001227_040 Hb_006718_040 Hb_006718_040 Hb_002232_050--Hb_006718_040 Hb_000333_120 Hb_000333_120 Hb_002232_050--Hb_000333_120 Hb_001946_060 Hb_001946_060 Hb_002232_050--Hb_001946_060 Hb_001363_030--Hb_001365_040 Hb_000003_620 Hb_000003_620 Hb_001363_030--Hb_000003_620 Hb_009778_030 Hb_009778_030 Hb_001363_030--Hb_009778_030 Hb_001363_030--Hb_004970_130 Hb_118777_010 Hb_118777_010 Hb_001363_030--Hb_118777_010 Hb_000111_130 Hb_000111_130 Hb_001363_030--Hb_000111_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.371205 0.0105242 0.00533008 0.0213396 0.0128452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0161213 0 0 0.0906242 0.0540299

CAGE analysis