Hb_004021_120

Information

Type -
Description -
Location Contig4021: 96775-97564
Sequence    

Annotation

kegg
ID rcu:RCOM_1339260
description short chain alcohol dehydrogenase, putative (EC:1.1.1.53)
nr
ID XP_012075643.1
description PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
swissprot
ID Q94KL7
description Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia PE=1 SV=1
trembl
ID A0A067KSX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09237 PE=4 SV=1
Gene Ontology
ID GO:0047044
description secoisolariciresinol dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004021_120 0.0 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
2 Hb_167020_010 0.1357674023 - - unnamed protein product [Vitis vinifera]
3 Hb_003442_120 0.139011065 - - hypothetical protein VITISV_019818 [Vitis vinifera]
4 Hb_003727_060 0.1443843353 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_118046_010 0.1464633067 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
6 Hb_004063_010 0.1496963506 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_002585_060 0.151669709 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
8 Hb_151694_010 0.1674032067 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
9 Hb_007709_020 0.1706228824 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
10 Hb_120268_010 0.1711579859 - - PREDICTED: chitin elicitor receptor kinase 1-like isoform X3 [Populus euphratica]
11 Hb_001907_020 0.1765121536 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
12 Hb_148121_030 0.1772817342 - - PREDICTED: zinc-finger homeodomain protein 14 [Gossypium raimondii]
13 Hb_011174_100 0.1802196803 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_002142_010 0.1824528382 - - conserved hypothetical protein [Ricinus communis]
15 Hb_028872_040 0.1876473185 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000236_430 0.1880396779 - - PREDICTED: uncharacterized protein LOC105633302 [Jatropha curcas]
17 Hb_000028_270 0.1970393356 - - -
18 Hb_032299_070 0.1981223416 - - -
19 Hb_002025_240 0.2000107957 - - -
20 Hb_011242_070 0.2008635023 - - beta-cyanoalanine synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_004021_120 Hb_004021_120 Hb_167020_010 Hb_167020_010 Hb_004021_120--Hb_167020_010 Hb_003442_120 Hb_003442_120 Hb_004021_120--Hb_003442_120 Hb_003727_060 Hb_003727_060 Hb_004021_120--Hb_003727_060 Hb_118046_010 Hb_118046_010 Hb_004021_120--Hb_118046_010 Hb_004063_010 Hb_004063_010 Hb_004021_120--Hb_004063_010 Hb_002585_060 Hb_002585_060 Hb_004021_120--Hb_002585_060 Hb_005081_090 Hb_005081_090 Hb_167020_010--Hb_005081_090 Hb_000915_220 Hb_000915_220 Hb_167020_010--Hb_000915_220 Hb_001477_120 Hb_001477_120 Hb_167020_010--Hb_001477_120 Hb_002571_050 Hb_002571_050 Hb_167020_010--Hb_002571_050 Hb_129399_010 Hb_129399_010 Hb_167020_010--Hb_129399_010 Hb_003442_120--Hb_118046_010 Hb_002025_240 Hb_002025_240 Hb_003442_120--Hb_002025_240 Hb_003442_120--Hb_004063_010 Hb_130579_050 Hb_130579_050 Hb_003442_120--Hb_130579_050 Hb_003442_120--Hb_003727_060 Hb_000028_270 Hb_000028_270 Hb_003442_120--Hb_000028_270 Hb_003727_060--Hb_004063_010 Hb_003727_060--Hb_118046_010 Hb_003727_060--Hb_002585_060 Hb_003938_100 Hb_003938_100 Hb_003727_060--Hb_003938_100 Hb_038190_030 Hb_038190_030 Hb_003727_060--Hb_038190_030 Hb_118046_010--Hb_004063_010 Hb_118046_010--Hb_130579_050 Hb_118046_010--Hb_002025_240 Hb_118046_010--Hb_000028_270 Hb_004063_010--Hb_002585_060 Hb_058095_030 Hb_058095_030 Hb_004063_010--Hb_058095_030 Hb_004063_010--Hb_000028_270 Hb_002585_060--Hb_058095_030 Hb_138667_010 Hb_138667_010 Hb_002585_060--Hb_138667_010 Hb_000243_050 Hb_000243_050 Hb_002585_060--Hb_000243_050 Hb_000280_120 Hb_000280_120 Hb_002585_060--Hb_000280_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.210282 0.022461 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.10925 0.108177

CAGE analysis