Hb_171900_030

Information

Type transcription factor
Description TF Family: MYB
Location Contig171900: 11271-12679
Sequence    

Annotation

kegg
ID rcu:RCOM_1609110
description r2r3-myb transcription factor, putative
nr
ID XP_012083678.1
description PREDICTED: myb-related protein MYBAS2 [Jatropha curcas]
swissprot
ID A2WW87
description Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1
trembl
ID B9RD28
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_1609110 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171900_030 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein MYBAS2 [Jatropha curcas]
2 Hb_008890_030 0.1668962343 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_002076_030 0.1767847489 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
4 Hb_000879_240 0.2131300535 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631008 [Jatropha curcas]
5 Hb_004108_120 0.2164252543 - - PREDICTED: EID1-like F-box protein 3 [Jatropha curcas]
6 Hb_011232_010 0.2353849843 - - Leucine-rich repeat receptor-like protein kinase family protein [Theobroma cacao]
7 Hb_001771_060 0.2397969884 - - hypothetical protein B456_012G144100 [Gossypium raimondii]
8 Hb_000347_380 0.2421106997 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
9 Hb_010175_050 0.253215722 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
10 Hb_008078_020 0.2549634534 - - hypothetical protein JCGZ_01297 [Jatropha curcas]
11 Hb_019026_040 0.256361277 - - S-locus lectin protein kinase family protein [Theobroma cacao]
12 Hb_002006_120 0.2573275058 - - PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Jatropha curcas]
13 Hb_001629_010 0.2597198238 - - Disease resistance protein RPM1, putative [Theobroma cacao]
14 Hb_002999_130 0.2597437027 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
15 Hb_003811_030 0.2612838226 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
16 Hb_028285_020 0.2614622152 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
17 Hb_008341_010 0.2630623964 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
18 Hb_000230_250 0.2646585898 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
19 Hb_107552_020 0.2669919194 - - Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
20 Hb_010091_030 0.2678467153 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]

Gene co-expression network

sample Hb_171900_030 Hb_171900_030 Hb_008890_030 Hb_008890_030 Hb_171900_030--Hb_008890_030 Hb_002076_030 Hb_002076_030 Hb_171900_030--Hb_002076_030 Hb_000879_240 Hb_000879_240 Hb_171900_030--Hb_000879_240 Hb_004108_120 Hb_004108_120 Hb_171900_030--Hb_004108_120 Hb_011232_010 Hb_011232_010 Hb_171900_030--Hb_011232_010 Hb_001771_060 Hb_001771_060 Hb_171900_030--Hb_001771_060 Hb_001629_010 Hb_001629_010 Hb_008890_030--Hb_001629_010 Hb_008890_030--Hb_002076_030 Hb_002498_150 Hb_002498_150 Hb_008890_030--Hb_002498_150 Hb_008890_030--Hb_011232_010 Hb_095449_010 Hb_095449_010 Hb_008890_030--Hb_095449_010 Hb_002076_030--Hb_001771_060 Hb_002076_030--Hb_004108_120 Hb_186312_010 Hb_186312_010 Hb_002076_030--Hb_186312_010 Hb_002999_140 Hb_002999_140 Hb_002076_030--Hb_002999_140 Hb_002006_120 Hb_002006_120 Hb_002076_030--Hb_002006_120 Hb_003683_070 Hb_003683_070 Hb_000879_240--Hb_003683_070 Hb_002999_130 Hb_002999_130 Hb_000879_240--Hb_002999_130 Hb_000879_240--Hb_001771_060 Hb_000186_180 Hb_000186_180 Hb_000879_240--Hb_000186_180 Hb_010607_010 Hb_010607_010 Hb_000879_240--Hb_010607_010 Hb_000230_250 Hb_000230_250 Hb_000879_240--Hb_000230_250 Hb_028285_020 Hb_028285_020 Hb_004108_120--Hb_028285_020 Hb_004108_120--Hb_001771_060 Hb_004108_120--Hb_002999_130 Hb_019026_040 Hb_019026_040 Hb_004108_120--Hb_019026_040 Hb_152414_010 Hb_152414_010 Hb_004108_120--Hb_152414_010 Hb_073171_050 Hb_073171_050 Hb_004108_120--Hb_073171_050 Hb_008078_020 Hb_008078_020 Hb_011232_010--Hb_008078_020 Hb_004570_040 Hb_004570_040 Hb_011232_010--Hb_004570_040 Hb_006873_030 Hb_006873_030 Hb_011232_010--Hb_006873_030 Hb_005545_080 Hb_005545_080 Hb_011232_010--Hb_005545_080 Hb_002097_120 Hb_002097_120 Hb_011232_010--Hb_002097_120 Hb_001771_060--Hb_002999_130 Hb_001771_060--Hb_028285_020 Hb_001771_060--Hb_002999_140 Hb_009557_080 Hb_009557_080 Hb_001771_060--Hb_009557_080 Hb_000656_260 Hb_000656_260 Hb_001771_060--Hb_000656_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.364935 0.153267 0.0219592 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0895168 0 0.0180427 0.181839

CAGE analysis