Hb_001629_010

Information

Type -
Description -
Location Contig1629: 644-2573
Sequence    

Annotation

kegg
ID tcc:TCM_031201
description Disease resistance protein RPM1, putative
nr
ID XP_007021166.1
description Disease resistance protein RPM1, putative [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061F6P6
description Disease resistance protein RPM1, putative OS=Theobroma cacao GN=TCM_031201 PE=4 SV=1
Gene Ontology
ID GO:0097159
description disease resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001629_010 0.0 - - Disease resistance protein RPM1, putative [Theobroma cacao]
2 Hb_008890_030 0.240729063 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_002552_020 0.2488179548 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
4 Hb_171900_030 0.2597198238 transcription factor TF Family: MYB PREDICTED: myb-related protein MYBAS2 [Jatropha curcas]
5 Hb_002010_050 0.2786848092 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000340_250 0.2849447387 - - PREDICTED: probable galacturonosyltransferase-like 4 [Jatropha curcas]
7 Hb_007044_100 0.3055801338 - - hypothetical protein POPTR_0004s10420g [Populus trichocarpa]
8 Hb_000025_420 0.3111245372 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001925_070 0.3145222249 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
10 Hb_002076_030 0.3175163401 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
11 Hb_000453_280 0.3193425491 - - negative cofactor 2 transcriptional co-repressor, putative [Ricinus communis]
12 Hb_000049_240 0.3237721964 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
13 Hb_000392_410 0.324581536 - - PREDICTED: uncharacterized protein LOC104882159 [Vitis vinifera]
14 Hb_002000_120 0.3287499012 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_002766_050 0.3324789501 - - PREDICTED: probable carboxylesterase 16 [Jatropha curcas]
16 Hb_001901_030 0.3357944669 - - -
17 Hb_002078_270 0.3362716021 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
18 Hb_001862_090 0.3368096364 - - hypothetical protein VITISV_026680 [Vitis vinifera]
19 Hb_000808_260 0.3370525787 - - hypothetical protein RCOM_1434920 [Ricinus communis]
20 Hb_000092_120 0.3382406954 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Populus euphratica]

Gene co-expression network

sample Hb_001629_010 Hb_001629_010 Hb_008890_030 Hb_008890_030 Hb_001629_010--Hb_008890_030 Hb_002552_020 Hb_002552_020 Hb_001629_010--Hb_002552_020 Hb_171900_030 Hb_171900_030 Hb_001629_010--Hb_171900_030 Hb_002010_050 Hb_002010_050 Hb_001629_010--Hb_002010_050 Hb_000340_250 Hb_000340_250 Hb_001629_010--Hb_000340_250 Hb_007044_100 Hb_007044_100 Hb_001629_010--Hb_007044_100 Hb_008890_030--Hb_171900_030 Hb_002076_030 Hb_002076_030 Hb_008890_030--Hb_002076_030 Hb_002498_150 Hb_002498_150 Hb_008890_030--Hb_002498_150 Hb_011232_010 Hb_011232_010 Hb_008890_030--Hb_011232_010 Hb_095449_010 Hb_095449_010 Hb_008890_030--Hb_095449_010 Hb_001925_070 Hb_001925_070 Hb_002552_020--Hb_001925_070 Hb_002552_020--Hb_007044_100 Hb_005917_030 Hb_005917_030 Hb_002552_020--Hb_005917_030 Hb_000203_210 Hb_000203_210 Hb_002552_020--Hb_000203_210 Hb_002078_270 Hb_002078_270 Hb_002552_020--Hb_002078_270 Hb_000808_260 Hb_000808_260 Hb_002552_020--Hb_000808_260 Hb_171900_030--Hb_002076_030 Hb_000879_240 Hb_000879_240 Hb_171900_030--Hb_000879_240 Hb_004108_120 Hb_004108_120 Hb_171900_030--Hb_004108_120 Hb_171900_030--Hb_011232_010 Hb_001771_060 Hb_001771_060 Hb_171900_030--Hb_001771_060 Hb_002010_050--Hb_000808_260 Hb_119327_010 Hb_119327_010 Hb_002010_050--Hb_119327_010 Hb_001556_020 Hb_001556_020 Hb_002010_050--Hb_001556_020 Hb_002010_050--Hb_000203_210 Hb_056196_010 Hb_056196_010 Hb_002010_050--Hb_056196_010 Hb_000453_280 Hb_000453_280 Hb_002010_050--Hb_000453_280 Hb_000169_060 Hb_000169_060 Hb_000340_250--Hb_000169_060 Hb_002284_030 Hb_002284_030 Hb_000340_250--Hb_002284_030 Hb_000836_560 Hb_000836_560 Hb_000340_250--Hb_000836_560 Hb_004994_190 Hb_004994_190 Hb_000340_250--Hb_004994_190 Hb_000340_250--Hb_001556_020 Hb_001140_320 Hb_001140_320 Hb_000340_250--Hb_001140_320 Hb_003910_050 Hb_003910_050 Hb_007044_100--Hb_003910_050 Hb_007044_100--Hb_005917_030 Hb_005695_080 Hb_005695_080 Hb_007044_100--Hb_005695_080 Hb_002235_100 Hb_002235_100 Hb_007044_100--Hb_002235_100 Hb_004502_010 Hb_004502_010 Hb_007044_100--Hb_004502_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.591163 0.342052 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136101 0.321046 0 0.108313 0.429369

CAGE analysis